FC871249

Overview
NameFC871249
Unique NameFC871249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_NEUCR (Autophagy-related protein 8 OS=Neurospora crassa GN=atg-8 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_NEOFI (Autophagy-related protein 8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=atg8 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_EMENI (Autophagy-related protein 8 OS=Emericella nidulans GN=atg8 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_COLLN (Autophagy-related protein 8 OS=Colletotrichum lindemuthianum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_ASPTN (Autophagy-related protein 8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=atg8 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_ASPOR (Autophagy-related protein 8 OS=Aspergillus oryzae GN=atg8 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_ASPNC (Autophagy-related protein 8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=atg8 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_ASPFU (Autophagy-related protein 8 OS=Aspergillus fumigatus GN=atg8 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_ASPCL (Autophagy-related protein 8 OS=Aspergillus clavatus GN=atg8 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:    5 AEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 142
            AEKAIF+FV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFGS
Sbjct:   73 AEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGS 118
The following BLAST results are available for this feature:
BLAST of FC871249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ATG8_NEUCR4.235e-1684.78Autophagy-related protein 8 OS=Neurospora crassa G... [more]
ATG8_NEOFI4.235e-1684.78Autophagy-related protein 8 OS=Neosartorya fischer... [more]
ATG8_EMENI4.235e-1684.78Autophagy-related protein 8 OS=Emericella nidulans... [more]
ATG8_COLLN4.235e-1684.78Autophagy-related protein 8 OS=Colletotrichum lind... [more]
ATG8_ASPTN4.235e-1684.78Autophagy-related protein 8 OS=Aspergillus terreus... [more]
ATG8_ASPOR4.235e-1684.78Autophagy-related protein 8 OS=Aspergillus oryzae ... [more]
ATG8_ASPNC4.235e-1684.78Autophagy-related protein 8 OS=Aspergillus niger (... [more]
ATG8_ASPFU4.235e-1684.78Autophagy-related protein 8 OS=Aspergillus fumigat... [more]
ATG8_ASPCL4.235e-1684.78Autophagy-related protein 8 OS=Aspergillus clavatu... [more]
ATG8A_ARATH4.235e-1684.78Autophagy-related protein 8a OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK3DF06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871249 ID=FC871249; Name=FC871249; organism=Citrus sinensis; type=EST; length=635bp
GAGTGCTGAAAAGGCGATATTTATTTTTGTGGATAATGTGCTCCCACCTA
CAGGTGCAATTATGTCTGCCATATACGAAGAGAAAAAGGATGAAGATGGT
TTTCTTTATGTGACTTACAGTGGGGAGAACACATTTGGAAGCCACATCCC
AGTTTAGCCTTGTGATTATCTATCTGCTCATTGTGTGGTTTCTTGTGCGA
CCACATTTTTATCTCAATTATCATCCTTGCTTTCCGCTGAATATTCCTTT
ATCGGGCATATTTTATATTTTATAAAGACATTGCCAGTGATAATATGTAC
AGTTACCTATTGTATATAAGTCTTAAAGGCATAATATGTCAAATTTCTTT
CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAACCCCCCCTTTTTTTTTTAAAAATTGGTTTTTAAAAAAAAATTTTT
TTTTTTTTTTTTTTGGCCCAAAGGGGGCCCTCCCCCAAAAAAAAAAAATT
TTTTTTCCCCCCCCCCAAAAACCCCCCAAGGGGGGGTTATATAAGGGGGC
AATTTTTTTTTCCGGCCCTCCCGGGCCCGGTCCCA
back to top