FC871249

Overview
NameFC871249
Unique NameFC871249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_COCIM (Autophagy-related protein 8 OS=Coccidioides immitis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.224e-16
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 142
            S EKAIFIFVD VLPPT A+MS+IYEE KD+DGFLY+TYSGENTFG+
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDDDGFLYITYSGENTFGN 117          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFV N+LPPT AIMSAIYEE KDEDGFLY++YSGENTFG
Sbjct:   72 SPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            SAEKAIF+FV N LPPT A+MSAIY+E KDEDGFLY+TYSGENTFG
Sbjct:   72 SAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:   72 SPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:   72 SPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSJ (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 142
            S EKAIF+FV N LPPT ++MSAIYEE KDEDGFLY+TYSGENTFGS
Sbjct:   72 SPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGS 118          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 142
            S EKAIF+FV N LPPT ++MSAIYEE KDEDGFLY+TYSGENTFGS
Sbjct:   72 SPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGS 118          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_SCLS1 (Autophagy-related protein 8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=atg8 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY++YSGENTFG
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFG 116          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_SCHPO (Autophagy-related protein 8 OS=Schizosaccharomyces pombe GN=atg8 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIP 151
            S EKAIFIF+D +LPPT A+MS IYEE K EDGFLY+TYSGENTFG+  P
Sbjct:   71 SPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVFP 120          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_BOTFB (Autophagy-related protein 8 OS=Botryotinia fuckeliana (strain B05.10) GN=atg8 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY++YSGENTFG
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of FC871249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ATG8_COCIM7.224e-1680.85Autophagy-related protein 8 OS=Coccidioides immiti... [more]
ATG8D_ARATH9.435e-1684.78Autophagy-related protein 8d OS=Arabidopsis thalia... [more]
ATG8C_ARATH9.435e-1682.61Autophagy-related protein 8c OS=Arabidopsis thalia... [more]
ATG8B_ORYSJ9.435e-1684.78Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI9.435e-1684.78Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8A_ORYSJ9.435e-1680.85Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8A_ORYSI9.435e-1680.85Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8_SCLS11.232e-1582.61Autophagy-related protein 8 OS=Sclerotinia sclerot... [more]
ATG8_SCHPO1.232e-1574.00Autophagy-related protein 8 OS=Schizosaccharomyces... [more]
ATG8_BOTFB1.232e-1582.61Autophagy-related protein 8 OS=Botryotinia fuckeli... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DF06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871249 ID=FC871249; Name=FC871249; organism=Citrus sinensis; type=EST; length=635bp
GAGTGCTGAAAAGGCGATATTTATTTTTGTGGATAATGTGCTCCCACCTA
CAGGTGCAATTATGTCTGCCATATACGAAGAGAAAAAGGATGAAGATGGT
TTTCTTTATGTGACTTACAGTGGGGAGAACACATTTGGAAGCCACATCCC
AGTTTAGCCTTGTGATTATCTATCTGCTCATTGTGTGGTTTCTTGTGCGA
CCACATTTTTATCTCAATTATCATCCTTGCTTTCCGCTGAATATTCCTTT
ATCGGGCATATTTTATATTTTATAAAGACATTGCCAGTGATAATATGTAC
AGTTACCTATTGTATATAAGTCTTAAAGGCATAATATGTCAAATTTCTTT
CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAACCCCCCCTTTTTTTTTTAAAAATTGGTTTTTAAAAAAAAATTTTT
TTTTTTTTTTTTTTGGCCCAAAGGGGGCCCTCCCCCAAAAAAAAAAAATT
TTTTTTCCCCCCCCCCAAAAACCCCCCAAGGGGGGGTTATATAAGGGGGC
AATTTTTTTTTCCGGCCCTCCCGGGCCCGGTCCCA
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