FC871249

Overview
NameFC871249
Unique NameFC871249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:    5 AEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            +EKAIF+FVD  +P +   M  +YE++KDEDGFLYV YSGENTFG
Sbjct:   72 SEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:    5 AEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            +EKAIF+FVD  +P +   M  +YE++KDEDGFLYV YSGENTFG
Sbjct:   72 SEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:    5 AEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            +EKAIF+FVD  +P +   M  +YE++KDEDGFLYV YSGENTFG
Sbjct:   72 SEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
[Close]
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:    8 EKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 148
            +KAIF+FV+ N LPP+  ++S+IY+  KDEDGFLY+ YSGENTFGS I
Sbjct:   79 QKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFGSDI 126
The following BLAST results are available for this feature:
BLAST of FC871249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
GBRL2_MOUSE6.997e-1164.44Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN6.997e-1164.44Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN6.997e-1164.44Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8L_DICDI9.139e-1164.58Autophagy-related protein 8-like protein DDB_G0290... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DF06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871249 ID=FC871249; Name=FC871249; organism=Citrus sinensis; type=EST; length=635bp
GAGTGCTGAAAAGGCGATATTTATTTTTGTGGATAATGTGCTCCCACCTA
CAGGTGCAATTATGTCTGCCATATACGAAGAGAAAAAGGATGAAGATGGT
TTTCTTTATGTGACTTACAGTGGGGAGAACACATTTGGAAGCCACATCCC
AGTTTAGCCTTGTGATTATCTATCTGCTCATTGTGTGGTTTCTTGTGCGA
CCACATTTTTATCTCAATTATCATCCTTGCTTTCCGCTGAATATTCCTTT
ATCGGGCATATTTTATATTTTATAAAGACATTGCCAGTGATAATATGTAC
AGTTACCTATTGTATATAAGTCTTAAAGGCATAATATGTCAAATTTCTTT
CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAACCCCCCCTTTTTTTTTTAAAAATTGGTTTTTAAAAAAAAATTTTT
TTTTTTTTTTTTTTGGCCCAAAGGGGGCCCTCCCCCAAAAAAAAAAAATT
TTTTTTCCCCCCCCCCAAAAACCCCCCAAGGGGGGGTTATATAAGGGGGC
AATTTTTTTTTCCGGCCCTCCCGGGCCCGGTCCCA
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