FC871246

Overview
NameFC871246
Unique NameFC871246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871246 vs. ExPASy Swiss-Prot
Match: LHT1_ARATH (Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.612e-15
Identity = 60/188 (31.91%), Postives = 97/188 (51.60%), Query Frame = 3
Query:  222 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSN----NPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAK 770
            + R   W  ++ H +TA++G+GVL L +A++QLGW  G AVL+    IT YT   + + +   + V GKR   Y ++ + + G +  + +    Q    IGV I Y +T   S+          +  H + C           ++IFA +  VLS +PNF+ +S +S+ AAVMS +YS+I    S +K
Sbjct:   32 SSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGIAVLVLSWVITLYTLWQMVEMH---EMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSL----------KKFHELVCDDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASK 206          
BLAST of FC871246 vs. ExPASy Swiss-Prot
Match: LHT2_ARATH (Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.161e-15
Identity = 57/185 (30.81%), Postives = 94/185 (50.81%), Query Frame = 3
Query:  222 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI-IFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAK 770
            + R   W  ++ H +TA++G+GVLSL +A++ LGW  G  +++    IT YT   + + +   + V GKR   Y ++ + + G +  + +    Q    +GV I Y +T   S+  V +  C         C        I IFA +  V+S +PNF+ +S +S+ AAVMS  YS+I    S+ K
Sbjct:   27 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMVMSWIITLYTLWQMVEMH---EIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVC-------PDCKEIRTTFWIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHK 201          
BLAST of FC871246 vs. ExPASy Swiss-Prot
Match: LHTL3_ARATH (Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.897e-14
Identity = 55/188 (29.26%), Postives = 96/188 (51.06%), Query Frame = 3
Query:  222 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGD 782
            A R   W  ++ H +TA++G+GVL L +A+++LGW  G  VL+    IT YT   + + +   +   GKR   Y ++ +A+ G +  + +    Q        I Y +T   S+  + + +        +K        ++IFA  Q VLS + NF+ +S +S++AAVMS +YS+I    S+ K + +
Sbjct:   32 ASRNANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMH---EMFEGKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGDYECRKLKV----RHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVAN 212          
BLAST of FC871246 vs. ExPASy Swiss-Prot
Match: LHTL4_ARATH (Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.518e-13
Identity = 59/185 (31.89%), Postives = 95/185 (51.35%), Query Frame = 3
Query:  222 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSN-NPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAK 770
            A R   W  ++ H +TA++G+GVL L +A+++LGW  G  VL+    IT YT   + + +   +   G+R   Y ++ +A+ G +  + +    Q    I V I Y +T   S+  V         G   KC        ++IFA  Q VLS + NF+ +S +S++AAVMS +YS+I    S+ K
Sbjct:   30 ASRNANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTLWQMIEMH---EMFEGQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEISVCIVYMVTGGKSLKNVHDLAL----GDGDKCTKLRIQHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSVSYSTIAWVASLRK 207          
BLAST of FC871246 vs. ExPASy Swiss-Prot
Match: LHTL5_ARATH (Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.982e-13
Identity = 58/184 (31.52%), Postives = 95/184 (51.63%), Query Frame = 3
Query:  222 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNL-IGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAK 770
            A R   W  ++ H +TA++G+GVL L +A++QLGW  G   ++    IT+Y+   L    +  + V GKR   Y ++ + + G +      + Q   + I   I Y +T   S+   K       +  H++        ++ FA +Q+VLSQ P+F+ +  +S+LAA+MSF YS I    SIAK
Sbjct:   33 ASREAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFYS---LWQMVQLHEAVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSL--KKFVELLFPNLEHIR----QTYYILGFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVASIAK 207          
BLAST of FC871246 vs. ExPASy Swiss-Prot
Match: LHTL6_ARATH (Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 59/185 (31.89%), Postives = 87/185 (47.03%), Query Frame = 3
Query:  228 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVL---MAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNL-IGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMII-FACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIA 767
            R   W  ++ H +TA+IG+GVLSL +A+A LGW  G  VL      +  T +    L +C      V G R   Y+D+ R + G +      L Q   + +G  I Y +T    +       C         C        I+ F  +  +LSQ+PNF+ ++ +S+ AAVMS  YS+I  G SIA
Sbjct:   28 RPAKWWYSTFHTVTAMIGAGVLSLPYAMAYLGWGPGTFVLAMTWGLTLNTMWQMVQLHEC------VPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMVTGGKCLKQFVEITC-------STCTPVRQSYWILGFGGVHFILSQLPNFNSVAGVSLAAAVMSLCYSTIAWGGSIA 199          
The following BLAST results are available for this feature:
BLAST of FC871246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
LHT1_ARATH3.612e-1531.91Lysine histidine transporter 1 OS=Arabidopsis thal... [more]
LHT2_ARATH6.161e-1530.81Lysine histidine transporter 2 OS=Arabidopsis thal... [more]
LHTL3_ARATH8.897e-1429.26Lysine histidine transporter-like 3 OS=Arabidopsis... [more]
LHTL4_ARATH1.518e-1331.89Lysine histidine transporter-like 4 OS=Arabidopsis... [more]
LHTL5_ARATH1.982e-1331.52Lysine histidine transporter-like 5 OS=Arabidopsis... [more]
LHTL6_ARATH1.285e-1231.89Lysine histidine transporter-like 6 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DF01FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871246 ID=FC871246; Name=FC871246; organism=Citrus sinensis; type=EST; length=871bp
CAACACTGCCCCACTGACCTTGCAGCATAAGCTGCTGCTACTGCTACTCA
TTTTTAATTAATCATATCTCCTAATTTCTCAACTTCTCAGCAACCCCATT
TCAGCTTCTTCTACTACTCAACAGAGACATGGCGATGGAGATGCAAAAGA
ACAGCATGTATATCGAACAAAATGACCCTGAAGGTGATATCCGCAAAGAC
TTTCTGGATGATGATGGTCGAGCAAAAAGAACTGGGACTTGGGTGACTGC
AAGTGCTCATATTATCACGGCAGTGATTGGCTCTGGAGTACTGTCTCTGG
CATGGGCCATTGCTCAGCTTGGCTGGGTAGCTGGCCCAGCTGTTCTCATG
GCTTTCTCATTCATCACCTATTACACCTCTACTTTGCTTTCCGATTGTTA
CCGGTCTCCTGATCCCGTCACCGGCAAGCGAAACTACACCTACATGGATG
TAGTCAGAGCTAGCCTAGGAGGAAGGAGCGTCCAGCTATGTGGATTGGCT
CAGTATGGAAATCTCATTGGAGTTACGATTGGTTATACTATCACTGCATC
TATTAGCATGGTGGCTGTTAAAAGGTCAAATTGCTTCCACAGACATGGTC
ATCATGTCAAGTGCTACACATCAAACAATCCACTCATGATCATCTTTGCC
TGCATCCAGATTGTTCTTAGCCAAATACCAAACTTTCATAAGCTCTCCTG
GCTCTCAATTCTCGCTGCCGTAATGTCTTTTGCTTATTCCTCCATTGGAA
TTGGCCTCTCCATAGCCAAAGTCATAGGTGATGGGCCGCATGCAACAACC
TTAACGGGGACAACAGTAGGAGTAGACGTGTCAGCATCAGAGAAAGTTTG
GAGAGCATTTCAGGCAATTGG
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