DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.291e-23
Identity = 70/167 (41.92%), Postives = 97/167 (58.08%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            S+R  E+Q   E + EY    A+SLLK+ ++ KF E AEAH RL IDPKY DQQLR TV+LPKGTG+ V+VAV A+GEK  EA NA AD+ G ++LI++I++      +      +   +     K L PR     PK G V         +FK  K+++R +  G+
Sbjct:    6 SRRLRELQAKVEDR-EYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVMP-QVAKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THEAB (50S ribosomal protein L1 OS=Thermosipho africanus (strain TCF52B) GN=rplA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.687e-23
Identity = 69/162 (42.59%), Postives = 97/162 (59.88%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            SKR+ E++ L +  K+YDL  AI L K++++ KF ET E H + NID + +DQQ+R+T++LP GTGK VKV V A GEK +EAK A AD VG +DL E+I++    L     + T +  R   K  K L PR     PK G V        K+FK+ +++ R
Sbjct:    5 SKRYNEVRKLVDRNKDYDLNEAIDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTIALPHGTGKEVKVLVFATGEKAEEAKAAGADYVGAEDLAEKIQKE-NFLDFDVAIATPDMMRVIGKLGKILGPRGLMPNPKAGTVTNDVASAVKEFKKGRMEVR 165
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CYAP7 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.687e-23
Identity = 66/167 (39.52%), Postives = 97/167 (58.08%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            S+RF E     +  K Y+   A++LLK+ ++ KF ETAE H RL IDPKY DQQLR TV+ PKGTG++V+VAV A+GEK  EA +A AD+VG ++LI++I+  +   +       +   +     + L PR     PK G V        ++FK  K ++R +  G+
Sbjct:    6 SRRFKEALAKVDQDKAYEPLEALNLLKETATAKFDETAEVHVRLGIDPKYTDQQLRTTVTFPKGTGQTVRVAVIARGEKVQEASSAGADIVGSEELIDEIQNGMMDFEVLIATPDMMP-KVAKLGRLLGPRGLMPSPKGGTVTTDLAAAIQEFKAGKQEFRADRTGI 171
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.687e-23
Identity = 70/167 (41.92%), Postives = 97/167 (58.08%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            S+R  E+Q   E + EY    A+ LLK+ ++ KF E AEAH RL IDPKY DQQLR TV+LPKGTG+ V+VAV A+GEK  EA NA AD+VG ++LI++I++      +      +   +     K L PR     PK G V         +FK  K+++R +  G+
Sbjct:    6 SRRLRELQAKVEDR-EYGPLDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDEIQKGRMDFDKLIATPDVMP-QVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THEEB (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.203e-23
Identity = 72/173 (41.62%), Postives = 102/173 (58.96%), Query Frame = 3 
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEK---FLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            R  S+R  E+    E +    L+ A+ LLK+ ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG++++VAV A+GEK  EA  A AD+VG ++LI++I++   G    + L        P   K    L PR     PK G V    P+  ++FK  KV++R +  G+
Sbjct:    2 RKLSRRLRELYAKVEDRPYAPLE-ALQLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQTIRVAVIARGEKVTEASAAGADVVGSEELIDEIQK---GRMDFDLLIATPD-MMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIQEFKAGKVEFRADRSGI 169
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNY3 (50S ribosomal protein L1 OS=Synechocystis sp. (strain PCC 6803) GN=rplA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.203e-23
Identity = 70/160 (43.75%), Postives = 96/160 (60.00%), Query Frame = 3 
Query:  531 EGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +  K Y    A+ LLK+ ++ KF ETAEAH RL IDPKY+DQQ+R TVSLPKGTG++V+VAV A+GEK  EA +A AD+ G ++LIE+I++   G+   + L  I      PK     K L PR     PK G V         +FK  K+++R +  G+
Sbjct:   17 DDSKLYSPLEAMELLKETATAKFDETAEAHIRLGIDPKYSDQQIRTTVSLPKGTGQTVRVAVLARGEKVKEATDAGADIAGSEELIEEIQK---GMMDFDVL--IATPDMMPKIARLGKQLGPRGLMPSPKGGTVTADLAAAVNEFKAGKLEFRADRTGI 171
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_DICTD (50S ribosomal protein L1 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.203e-23
Identity = 67/170 (39.41%), Postives = 97/170 (57.06%), Query Frame = 3 
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKE--KFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            R KR+ ++ +L E  + Y  K A+SL+K++++ KF ET     RL +DP++ DQQ+R TV LP GTGK  KV V A+GEK  EA+ A AD VGG+DL++QI+        A     I G    P    K L PR     PK G V     +  K++K  +V++R + +G+
Sbjct:    4 RGKRYQQLLSLIEKGRLYSPKEAVSLVKKLATAKFDETINLAVRLGVDPRHADQQVRGTVVLPYGTGKEKKVLVFAEGEKAQEAREAGADYVGGEDLVKQIESGWLDFDVAIATPDIMGTLKIPSRLGKILGPRGLMPNPKTGTVTNDIAKAVKEYKAGRVEFRTDRYGI 173
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CAMJR (50S ribosomal protein L1 OS=Campylobacter jejuni (strain RM1221) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.329e-23
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            +KR  E+    +  KEY L  AI  +K + S KF ET E   +LN+DP++ DQ +R +V LP GTGK V+VAV A+  K DEAKNA AD+VG DDL+E+I++
Sbjct:    5 AKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEIQK 106

HSP 2 Score: 25.409 bits (54), Expect = 2.329e-23
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ QA
Sbjct:  128 GRILGPKGLMPNPKTGTVTMDVAQA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CAMJJ (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.329e-23
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            +KR  E+    +  KEY L  AI  +K + S KF ET E   +LN+DP++ DQ +R +V LP GTGK V+VAV A+  K DEAKNA AD+VG DDL+E+I++
Sbjct:    5 AKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEIQK 106

HSP 2 Score: 25.409 bits (54), Expect = 2.329e-23
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ QA
Sbjct:  128 GRILGPKGLMPNPKTGTVTMDVAQA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CAMJE (50S ribosomal protein L1 OS=Campylobacter jejuni GN=rplA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.329e-23
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            +KR  E+    +  KEY L  AI  +K + S KF ET E   +LN+DP++ DQ +R +V LP GTGK V+VAV A+  K DEAKNA AD+VG DDL+E+I++
Sbjct:    5 AKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEIQK 106

HSP 2 Score: 25.409 bits (54), Expect = 2.329e-23
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ QA
Sbjct:  128 GRILGPKGLMPNPKTGTVTMDVAQA 152
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_ANAVT1.291e-2341.9250S ribosomal protein L1 OS=Anabaena variabilis (s... [more]
RL1_THEAB1.687e-2342.5950S ribosomal protein L1 OS=Thermosipho africanus ... [more]
RL1_CYAP71.687e-2339.5250S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]
RL1_ANASP1.687e-2341.9250S ribosomal protein L1 OS=Anabaena sp. (strain P... [more]
RL1_THEEB2.203e-2341.6250S ribosomal protein L1 OS=Thermosynechococcus el... [more]
RL1_SYNY32.203e-2343.7550S ribosomal protein L1 OS=Synechocystis sp. (str... [more]
RL1_DICTD2.203e-2339.4150S ribosomal protein L1 OS=Dictyoglomus turgidum ... [more]
RL1_CAMJR2.329e-2350.0050S ribosomal protein L1 OS=Campylobacter jejuni (... [more]
RL1_CAMJJ2.329e-2350.0050S ribosomal protein L1 OS=Campylobacter jejuni s... [more]
RL1_CAMJE2.329e-2350.0050S ribosomal protein L1 OS=Campylobacter jejuni G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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