DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_JANSC (50S ribosomal protein L1 OS=Jannaschia sp. (strain CCS1) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.299e-19
Identity = 58/142 (40.85%), Postives = 86/142 (60.56%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLV 923
            KRF   +   EGK+   ++ A++LLK  S TKF ET E   +L +DP++ DQ +R TV+LP GTGK+V+VAV A+G K +EA  A AD+VG +DL+E ++     ++   C+ T +      +  K L PR+    PK+G V
Sbjct:    6 KRFAAAKAAVEGKENITVEEAVALLKGNSKTKFDETIEIAMKLGVDPRHADQMVRGTVNLPNGTGKTVRVAVFARGPKAEEATAAGADIVGAEDLMETVQGGT--IEFDRCIATPDMMPIVGRLGKVLGPRNLMPNPKIGTV 145          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HYPNA (50S ribosomal protein L1 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.299e-19
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 3
Query:  492 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            T+ KR   I+   +  K Y +  A+ L+K  +  KF E+ E    L +DPKY DQQ+R+ V+LP GTGK+++VAV A+ +K +EA  A AD+VG DDL E++        +      + G       K L PR     PK+G V P   +  K  K   V+++
Sbjct:    3 TKGKRARAIEQTVDKTKAYSVSEAVKLVKSNAKAKFDESIEIAINLGVDPKYADQQVRSVVNLPAGTGKTIRVAVFAKDKKAEEALAAGADIVGADDLFEKVNGGFMDFDRVIATPDMMG-LVGRLGKVLGPRGLMPNPKVGTVTPNVAQAVKDAKGGAVEFK 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ENT38 (50S ribosomal protein L1 OS=Enterobacter sp. (strain 638) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.299e-19
Identity = 59/171 (34.50%), Postives = 93/171 (54.39%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I++  +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV AQG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMSVIRDKVDATKQYDITEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRSVRVAVFAQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BACA2 (50S ribosomal protein L1 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.111e-19
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            + K+++E   L +  K YD+  A++L K+ ++ KF  T E  FRL +DP+ NDQQ+R  V LP GTGK+ +V V A+GEK  EA+ A AD VG  D I +I++
Sbjct:    4 KGKKYVEAAKLVDRAKAYDVAEAVALTKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGDSDYIAKIQQ 106          

HSP 2 Score: 22.7126 bits (47), Expect = 5.111e-19
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K GT T  + +A
Sbjct:  128 GRVLGPKGLMPNPKTGTVTFEVEKA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_YERE8 (50S ribosomal protein L1 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.615e-19
Identity = 58/171 (33.92%), Postives = 93/171 (54.39%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I++  +  K+YD+  A++LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV AQG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIRDKVDVTKQYDINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFAQGANAEAAKEAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_VIBFM (50S ribosomal protein L1 OS=Vibrio fischeri (strain MJ11) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.615e-19
Identity = 61/177 (34.46%), Postives = 90/177 (50.85%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR----------RIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   E  KEYD+  A++LLK++++ KFTE+ +    L ID + +DQ +R    LP GTG+ ++VAV  QG   + AK A ADLVG +DL E +K+              ++    L TI G           PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRNIREKVEVTKEYDINEAVALLKELATAKFTESVDVAVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFTQGANAEAAKEAGADLVGMEDLAELVKKGEMNFDVVVASPDAMRVVGQLGTILG-----------PRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_VIBF1 (50S ribosomal protein L1 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rplA PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 5.615e-19
Identity = 61/177 (34.46%), Postives = 90/177 (50.85%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR----------RIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   E  KEYD+  A++LLK++++ KFTE+ +    L ID + +DQ +R    LP GTG+ ++VAV  QG   + AK A ADLVG +DL E +K+              ++    L TI G           PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRNIREKVEVTKEYDINEAVALLKELATAKFTESVDVAVNLGIDARKSDQNVRGATVLPHGTGREIRVAVFTQGANAEAAKEAGADLVGMEDLAELVKKGEMNFDVVVASPDAMRVVGQLGTILG-----------PRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HELMI (50S ribosomal protein L1 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.615e-19
Identity = 59/166 (35.54%), Postives = 92/166 (55.42%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            K++LE   L +  +  + + A+ ++K++++ KF ET E  FRL +DP++ DQ +R  V LP GTGKS KVAV A+G+K  EA+ A AD VG +DL+E+I+        A     + G       + L P+     PK G V     R  ++ K  K++YR +  G+
Sbjct:    6 KKYLEQAKLVDRDQVLEAREAMDMVKKLATAKFDETVEVAFRLGVDPRHADQMIRGAVVLPHGTGKSRKVAVFAKGDKAKEAEAAGADAVGAEDLVEKIQGGWLDFDVAVATPDVMG-LVGKLGRLLGPKGLMPNPKTGTVTFDVARAIQEIKAGKIEYRVDKTGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ERWT9 (50S ribosomal protein L1 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.615e-19
Identity = 58/171 (33.92%), Postives = 93/171 (54.39%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I++  +  K+YD+  A++LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV AQG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIRDKVDSTKQYDINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFAQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ENTS8 (50S ribosomal protein L1 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.615e-19
Identity = 59/171 (34.50%), Postives = 92/171 (53.80%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I++  +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL EQIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIRDKVDATKQYDINEAITLLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLAEQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_JANSC4.299e-1940.8550S ribosomal protein L1 OS=Jannaschia sp. (strain... [more]
RL1_HYPNA4.299e-1935.5850S ribosomal protein L1 OS=Hyphomonas neptunium (... [more]
RL1_ENT384.299e-1934.5050S ribosomal protein L1 OS=Enterobacter sp. (stra... [more]
RL1_BACA25.111e-1944.6650S ribosomal protein L1 OS=Bacillus amyloliquefac... [more]
RL1_YERE85.615e-1933.9250S ribosomal protein L1 OS=Yersinia enterocolitic... [more]
RL1_VIBFM5.615e-1934.4650S ribosomal protein L1 OS=Vibrio fischeri (strai... [more]
RL1_VIBF15.615e-1934.4650S ribosomal protein L1 OS=Vibrio fischeri (strai... [more]
RL1_HELMI5.615e-1935.5450S ribosomal protein L1 OS=Heliobacterium modesti... [more]
RL1_ERWT95.615e-1933.9250S ribosomal protein L1 OS=Erwinia tasmaniensis (... [more]
RL1_ENTS85.615e-1934.5050S ribosomal protein L1 OS=Enterobacter sakazakii... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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