DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CHLTR (50S ribosomal protein L1 OS=Chlamydia trachomatis GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.615e-19
Identity = 59/167 (35.33%), Postives = 88/167 (52.69%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGLC 1001
            KR   IQ   +  K Y L  AI +LKQ  + +F +T +   +L IDP+ +DQQ+R +VSLP GTGK +++ V A G+K  EA  A AD VG DDL+E+IK        A     +         K L PR+    PK G V     +   + ++ K++++ +  G+C
Sbjct:    6 KRIRGIQETYDLAKSYSLGEAIDILKQCPTVRFDQTVDVSVKLGIDPRKSDQQIRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVEKIKGGWVDFDVAVATPDMMR-EVGKLGKVLGPRNLMPTPKAGTVTTDVVKTVAELRKGKIEFKADRAGVC 171          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CHLTA (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.615e-19
Identity = 59/167 (35.33%), Postives = 88/167 (52.69%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGLC 1001
            KR   IQ   +  K Y L  AI +LKQ  + +F +T +   +L IDP+ +DQQ+R +VSLP GTGK +++ V A G+K  EA  A AD VG DDL+E+IK        A     +         K L PR+    PK G V     +   + ++ K++++ +  G+C
Sbjct:    6 KRIRGIQETYDLAKSYSLGEAIDILKQCPTVRFDQTVDVSVKLGIDPRKSDQQIRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVEKIKGGWVDFDVAVATPDMMR-EVGKLGKVLGPRNLMPTPKAGTVTTDVVKTVAELRKGKIEFKADRAGVC 171          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CHLT2 (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.615e-19
Identity = 59/167 (35.33%), Postives = 88/167 (52.69%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGLC 1001
            KR   IQ   +  K Y L  AI +LKQ  + +F +T +   +L IDP+ +DQQ+R +VSLP GTGK +++ V A G+K  EA  A AD VG DDL+E+IK        A     +         K L PR+    PK G V     +   + ++ K++++ +  G+C
Sbjct:    6 KRIRGIQETYDLAKSYSLGEAIDILKQCPTVRFDQTVDVSVKLGIDPRKSDQQIRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVEKIKGGWVDFDVAVATPDMMR-EVGKLGKVLGPRNLMPTPKAGTVTTDVVKTIAELRKGKIEFKADRAGVC 171          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BIFLO (50S ribosomal protein L1 OS=Bifidobacterium longum GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.615e-19
Identity = 62/167 (37.13%), Postives = 87/167 (52.10%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HG 995
            RSK++ E     +    Y    AI+LLK M S  F +T EA FRL++DP+  DQ +R TV+LP GTGK+ KV V A+G K  EA  A AD+VG DDLI +++              + G +     + L PR     PK G V     +  K  K  K+++R + +G
Sbjct:    4 RSKKYREAAERVDRNNLYTANEAIALLKSMPSYNFDQTVEAVFRLSVDPRKADQLVRGTVNLPHGTGKTAKVLVFARGPKATEATEAGADIVGDDDLIAKVQGGFLDFDAVVATPDMMG-KVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNG 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BIFLD (50S ribosomal protein L1 OS=Bifidobacterium longum (strain DJO10A) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.615e-19
Identity = 62/167 (37.13%), Postives = 87/167 (52.10%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HG 995
            RSK++ E     +    Y    AI+LLK M S  F +T EA FRL++DP+  DQ +R TV+LP GTGK+ KV V A+G K  EA  A AD+VG DDLI +++              + G +     + L PR     PK G V     +  K  K  K+++R + +G
Sbjct:    4 RSKKYREAAERVDRNNLYTANEAIALLKSMPSYNFDQTVEAVFRLSVDPRKADQLVRGTVNLPHGTGKTAKVLVFARGPKATEATEAGADIVGDDDLIAKVQGGFLDFDAVVATPDMMG-KVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNG 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_AQUAE (50S ribosomal protein L1 OS=Aquifex aeolicus GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.615e-19
Identity = 62/169 (36.69%), Postives = 89/169 (52.66%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSST---KFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            R K+++E   L +  K Y L+ A+ LLK+M      +F ET E   RLN+DP+Y DQ +R +V LP G GK +KV V A+GE   +A+ A AD VGGD+LI +I +     +  +    I      PK     + L PR     PK G V     +  K  KR +V+++
Sbjct:    4 RGKKYIEASKLVDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADYVGGDELINKILKE----EWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFK 168          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_LACSS (50S ribosomal protein L1 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.650e-19
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            + K +LE     +  K Y ++ AI L+K++   KF  + E  +RLN+DPK  DQQ+R  V LP GTGK+ +V V AQGE+  +A+ A AD+VG +DL+E+I+
Sbjct:    4 KGKNYLEAAKQVDATKAYTVEEAIDLVKKVDFAKFDASLEVAYRLNVDPKQADQQIRGAVVLPNGTGKTQRVIVFAQGEQAKQAEAAGADVVGAEDLVEKIQ 105          

HSP 2 Score: 23.483 bits (49), Expect = 6.650e-19
Identity = 10/25 (40.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K GT T ++ +A
Sbjct:  128 GRVLGPKGLMPNPKTGTVTMDVTKA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THEP1 (50S ribosomal protein L1 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.333e-19
Identity = 61/166 (36.75%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-----IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            SKR+LE +   +  K YDL  AI L+K+ ++ KF ET E H +  ID +  +Q +R TV LP GTGK V+V V A+GE   EA  A AD VG +DL+E+I++         +   + +  I         K L PR     PK G V        K+FK+ +++ R
Sbjct:    5 SKRYLEARKFVDRTKYYDLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTVVLPHGTGKEVRVLVFAKGEAAKEALEAGADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRVIG-----RLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVR 165          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PARUW (50S ribosomal protein L1 OS=Protochlamydia amoebophila (strain UWE25) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.333e-19
Identity = 56/167 (33.53%), Postives = 86/167 (51.50%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR  EI    +  K Y ++ AI +LK+    KF +T E   +L +DP+ +DQ +R TVSLP GTGK++K+ V A+G+K  EA  A AD  G D+L+E++               +         K L PR     PK G V     +  ++ K  K++++ + HG+
Sbjct:    5 SKRIREIAKSLDAAKAYTIREAIDILKKCPPVKFDQTVEVSLKLGVDPRRSDQSVRGTVSLPNGTGKTMKILVFAKGDKVKEALEAGADYAGHDELLEKVNGGWTDFDAVVATPDMMR-EVGKLGKVLGPRGLMPTPKAGTVTTDIAKAIQELKAGKIEFKLDRHGV 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CHLTB (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.333e-19
Identity = 59/167 (35.33%), Postives = 88/167 (52.69%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGLC 1001
            KR   IQ   +  K Y L  AI +LKQ  + +F +T +   +L IDP+ +DQQ+R +VSLP GTGK +++ V A G+K  EA  A AD VG DDL+E+IK        A     +         K L PR+    PK G V     +   + ++ K++++ +  G+C
Sbjct:    6 KRIRGIQETYDLAKSYSLGEAIDILKQCPTVRFDQTVDVSVKLGIDPRKSDQQVRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVEKIKGGWVDFDVAVATPDMMR-EVGKLGKVLGPRNLMPTPKAGTVTTDVVKTIAELRKGKIEFKADRAGVC 171          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CHLTR5.615e-1935.3350S ribosomal protein L1 OS=Chlamydia trachomatis ... [more]
RL1_CHLTA5.615e-1935.3350S ribosomal protein L1 OS=Chlamydia trachomatis ... [more]
RL1_CHLT25.615e-1935.3350S ribosomal protein L1 OS=Chlamydia trachomatis ... [more]
RL1_BIFLO5.615e-1937.1350S ribosomal protein L1 OS=Bifidobacterium longum... [more]
RL1_BIFLD5.615e-1937.1350S ribosomal protein L1 OS=Bifidobacterium longum... [more]
RL1_AQUAE5.615e-1936.6950S ribosomal protein L1 OS=Aquifex aeolicus GN=rp... [more]
RL1_LACSS6.650e-1944.1250S ribosomal protein L1 OS=Lactobacillus sakei su... [more]
RL1_THEP17.333e-1936.7550S ribosomal protein L1 OS=Thermotoga petrophila ... [more]
RL1_PARUW7.333e-1933.5350S ribosomal protein L1 OS=Protochlamydia amoebop... [more]
RL1_CHLTB7.333e-1935.3350S ribosomal protein L1 OS=Chlamydia trachomatis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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