DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CHLMU (50S ribosomal protein L1 OS=Chlamydia muridarum GN=rplA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.577e-19
Identity = 59/167 (35.33%), Postives = 88/167 (52.69%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGLC 1001
            KR   IQ   +  K Y L  AI +LKQ  + +F +T +   +L IDP+ +DQQ+R +VSLP GTGK +++ V A G+K  EA  A AD VG DDL+E+IK        A     +         K L PR+    PK G V     +   + ++ K++++ +  G+C
Sbjct:    6 KRIRGIQEKYDFTKPYSLGEAIDILKQCPAVRFDQTVDVSVKLGIDPRKSDQQIRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVEKIKGGWVDFDVAVATPDMMR-EVGKLGKVLGPRNLMPTPKSGTVTTDVVKAIAELRKGKIEFKADRAGVC 171          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BACLD (50S ribosomal protein L1 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.577e-19
Identity = 60/162 (37.04%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            + K+++E   L +  K YD+  AI L+K+ ++ KF  T EA FRL +DP+ NDQQ+R  V LP GTGK+ +V V A+GEK  EA+ A AD VG  D I +I++             + G       + L P+     PK G V     +   + K  KV+YR
Sbjct:    4 KGKKYVEAAKLVDRTKAYDVNEAIELVKKTNTAKFDATVEAAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGDADYINKIQQGWFDFDVIVATPDMMG-EVGKIGRVLGPKGLMPNPKTGTVTFEVEKAVNEIKAGKVEYR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ALCBS (50S ribosomal protein L1 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.577e-19
Identity = 64/177 (36.16%), Postives = 92/177 (51.98%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK----------RRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   I+   E  K Y ++ A++LL ++S+ KF E+ +    L +DP+ +DQ +R    LP GTGK+V+VAV AQG K +EAK A AD+VG DDL EQ++               ++    L TI G           PR     PK+G V P   +  K  K  +V+YR +  G+
Sbjct:    5 SKRNRAIREKIEAGKLYPVEEAVALLAELSAVKFKESVDVAVNLGVDPRKSDQNVRGASVLPHGTGKTVRVAVFAQGAKAEEAKEAGADVVGFDDLAEQVQGGEINFDVVIASPDAMRVVGKLGTILG-----------PRGLMPNPKVGTVTPDVAQAVKNAKGGQVRYRTDKGGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_DESMR (50S ribosomal protein L1 OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.589e-19
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  519 QNLREGKKE------YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            +N RE  K+      Y++  A++L  Q    KF ET +    L ++PKY+DQ +R  VSLP G GK+++VA   +G+K  EA+ A AD VGGDDLIE++K
Sbjct:    6 KNYREAIKDIDLTAKYEVSEAMALTVQTGKAKFDETVDVALNLGVNPKYSDQMVRGAVSLPHGLGKTIRVAAFCKGDKETEAREAGADFVGGDDLIEKVK 105          

HSP 2 Score: 23.8682 bits (50), Expect = 9.589e-19
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GKI    GL+PN+K GT + ++ +A
Sbjct:  128 GKILGPRGLMPNAKTGTVSFDIGKA 152          

HSP 3 Score: 22.3274 bits (46), Expect = 9.589e-19
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = 1
Query:  787 LNK*KGGFLDFNKLIAFTQ*MVNV 858
            + K K GFLDF+  +A    M +V
Sbjct:  101 IEKVKNGFLDFDSAVATPDMMASV 124          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_AGRRK (50S ribosomal protein L1 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.124e-18
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            IQ +REG    K Y L  AI ++K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG+SV+VAV A+G K DEAK A AD+VG ++L+E ++
Sbjct:    6 IQKIREGVDPTKLYALTQAIGMVKERAIAKFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGAKADEAKAAGADIVGAEELVEIVQ 103          

HSP 2 Score: 22.7126 bits (47), Expect = 1.124e-18
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    G++PN K GT T ++  A
Sbjct:  126 GKVLGPRGMMPNPKVGTVTMDVKGA 150          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PSEA6 (50S ribosomal protein L1 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.251e-18
Identity = 58/171 (33.92%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   +++  E  KEYD   A++LLK++++ KF E+ +    L ID + +DQ +R    LP GTGK V+VAV  QG   + AK A AD+VG +DL EQ+K+        +   + +  +         + L PR     PK G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRARLVRDKVEATKEYDFNEAVALLKELATAKFAESVDVAVNLGIDARKSDQNVRGATVLPNGTGKEVRVAVFTQGANAEAAKEAGADIVGMEDLAEQVKKGEMNFDVVVASPDAMRVVG-----MLGQILGPRGLMPNPKTGTVTPDVATAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HAEIN (50S ribosomal protein L1 OS=Haemophilus influenzae GN=rplA PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.251e-18
Identity = 58/171 (33.92%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K+   I+   +  K Y++  AI++LKQ ++ KF E+ +    L IDP+ +DQ +R    LP GTG+ V+VAV  QG   D AK A ADLVG +DL EQIK+        +   + +  +         + L PR     PK+G V P      K  K  +++YR + +G+
Sbjct:    5 TKKMKAIKAGVDSTKAYEINEAIAVLKQFATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGREVRVAVFTQGANADAAKEAGADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HAEIG (50S ribosomal protein L1 OS=Haemophilus influenzae (strain PittGG) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.251e-18
Identity = 58/171 (33.92%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K+   I+   +  K Y++  AI++LKQ ++ KF E+ +    L IDP+ +DQ +R    LP GTG+ V+VAV  QG   D AK A ADLVG +DL EQIK+        +   + +  +         + L PR     PK+G V P      K  K  +++YR + +G+
Sbjct:    5 TKKMKAIKAGVDSTKAYEINEAIAVLKQFATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGREVRVAVFTQGANADAAKEAGADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HAEIE (50S ribosomal protein L1 OS=Haemophilus influenzae (strain PittEE) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.251e-18
Identity = 58/171 (33.92%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K+   I+   +  K Y++  AI++LKQ ++ KF E+ +    L IDP+ +DQ +R    LP GTG+ V+VAV  QG   D AK A ADLVG +DL EQIK+        +   + +  +         + L PR     PK+G V P      K  K  +++YR + +G+
Sbjct:    5 TKKMKAIKAGVDSTKAYEINEAIAVLKQFATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGREVRVAVFTQGANADAAKEAGADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HAEI8 (50S ribosomal protein L1 OS=Haemophilus influenzae (strain 86-028NP) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.251e-18
Identity = 58/171 (33.92%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K+   I+   +  K Y++  AI++LKQ ++ KF E+ +    L IDP+ +DQ +R    LP GTG+ V+VAV  QG   D AK A ADLVG +DL EQIK+        +   + +  +         + L PR     PK+G V P      K  K  +++YR + +G+
Sbjct:    5 TKKMKAIKAGVDSTKAYEINEAIAVLKQFATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGREVRVAVFTQGANADAAKEAGADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGI 170          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CHLMU9.577e-1935.3350S ribosomal protein L1 OS=Chlamydia muridarum GN... [more]
RL1_BACLD9.577e-1937.0450S ribosomal protein L1 OS=Bacillus licheniformis... [more]
RL1_ALCBS9.577e-1936.1650S ribosomal protein L1 OS=Alcanivorax borkumensi... [more]
RL1_DESMR9.589e-1944.0050S ribosomal protein L1 OS=Desulfovibrio magnetic... [more]
RL1_AGRRK1.124e-1847.9650S ribosomal protein L1 OS=Agrobacterium radiobac... [more]
RL1_PSEA61.251e-1833.9250S ribosomal protein L1 OS=Pseudoalteromonas atla... [more]
RL1_HAEIN1.251e-1833.9250S ribosomal protein L1 OS=Haemophilus influenzae... [more]
RL1_HAEIG1.251e-1833.9250S ribosomal protein L1 OS=Haemophilus influenzae... [more]
RL1_HAEIE1.251e-1833.9250S ribosomal protein L1 OS=Haemophilus influenzae... [more]
RL1_HAEI81.251e-1833.9250S ribosomal protein L1 OS=Haemophilus influenzae... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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