DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHIF8 (50S ribosomal protein L1 OS=Shigella flexneri serotype 5b (strain 8401) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHIDS (50S ribosomal protein L1 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHIBS (50S ribosomal protein L1 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHIB3 (50S ribosomal protein L1 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SERMA (50S ribosomal protein L1 OS=Serratia marcescens GN=rplA PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 61/177 (34.46%), Postives = 92/177 (51.98%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR----------RIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I++  +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL EQIK+              ++    L  I+G           PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIRDKVDATKQYDITEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQISG-----------PRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALTY (50S ribosomal protein L1 OS=Salmonella typhimurium GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALTI (50S ribosomal protein L1 OS=Salmonella typhi GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALSV (50S ribosomal protein L1 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALPK (50S ribosomal protein L1 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALPC (50S ribosomal protein L1 OS=Salmonella paratyphi C (strain RKS4594) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SHIF81.634e-1833.9250S ribosomal protein L1 OS=Shigella flexneri sero... [more]
RL1_SHIDS1.634e-1833.9250S ribosomal protein L1 OS=Shigella dysenteriae s... [more]
RL1_SHIBS1.634e-1833.9250S ribosomal protein L1 OS=Shigella boydii seroty... [more]
RL1_SHIB31.634e-1833.9250S ribosomal protein L1 OS=Shigella boydii seroty... [more]
RL1_SERMA1.634e-1834.4650S ribosomal protein L1 OS=Serratia marcescens GN... [more]
RL1_SALTY1.634e-1833.9250S ribosomal protein L1 OS=Salmonella typhimurium... [more]
RL1_SALTI1.634e-1833.9250S ribosomal protein L1 OS=Salmonella typhi GN=rp... [more]
RL1_SALSV1.634e-1833.9250S ribosomal protein L1 OS=Salmonella schwarzengr... [more]
RL1_SALPK1.634e-1833.9250S ribosomal protein L1 OS=Salmonella paratyphi A... [more]
RL1_SALPC1.634e-1833.9250S ribosomal protein L1 OS=Salmonella paratyphi C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
back to top