DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALPB (50S ribosomal protein L1 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALPA (50S ribosomal protein L1 OS=Salmonella paratyphi A GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALNS (50S ribosomal protein L1 OS=Salmonella newport (strain SL254) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALHS (50S ribosomal protein L1 OS=Salmonella heidelberg (strain SL476) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALEP (50S ribosomal protein L1 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALDC (50S ribosomal protein L1 OS=Salmonella dublin (strain CT_02021853) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALCH (50S ribosomal protein L1 OS=Salmonella choleraesuis GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALA4 (50S ribosomal protein L1 OS=Salmonella agona (strain SL483) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHILO (50S ribosomal protein L1 OS=Rhizobium loti GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 61/159 (38.36%), Postives = 87/159 (54.72%), Query Frame = 3 
Query:  516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            +   REG    K Y L  A+ LLK  SS KF ET E    L +DP++ DQ +R  V+LP GTG+SV+VAV A+G+K +EAK A AD+VG +DL++ +++    +    C+ T +      +  K L PR     PK+G V        K  K   V++R
Sbjct:    8 VSKTREGIDPNKAYALGEALKLLKDRSSVKFDETVEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGDKAEEAKAAGADIVGAEDLVDIVQKGT--IDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVKASKGGAVEFR 164
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_MYCMS (50S ribosomal protein L1 OS=Mycoplasma mycoides subsp. mycoides SC GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 66/174 (37.93%), Postives = 86/174 (49.43%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR--------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HG 995
            SKRF E  +  E  K Y L  A+ L KQ S+TKF  T E  F LNIDP+  DQQ+R  V LP GTGK+ +V V     K  EA+ A+AD+VGG++LI +IK          +   +    L  I         K L P+     PK G V     +     K+ KV+YR +  G
Sbjct:    5 SKRFKEALSKVEKNKVYPLTQALDLAKQTSTTKFDSTVEVAFNLNIDPRKADQQIRGAVVLPAGTGKTQRVLV-LTNTKTKEAEQAKADIVGGEELINRIKNENWFDFDIIVATPEMMAKLGAIG--------KILGPKGLMPNPKTGTVTIDVAKAVDDIKKRKVEYRADKEG 169
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SALPB1.634e-1833.9250S ribosomal protein L1 OS=Salmonella paratyphi B... [more]
RL1_SALPA1.634e-1833.9250S ribosomal protein L1 OS=Salmonella paratyphi A... [more]
RL1_SALNS1.634e-1833.9250S ribosomal protein L1 OS=Salmonella newport (st... [more]
RL1_SALHS1.634e-1833.9250S ribosomal protein L1 OS=Salmonella heidelberg ... [more]
RL1_SALEP1.634e-1833.9250S ribosomal protein L1 OS=Salmonella enteritidis... [more]
RL1_SALDC1.634e-1833.9250S ribosomal protein L1 OS=Salmonella dublin (str... [more]
RL1_SALCH1.634e-1833.9250S ribosomal protein L1 OS=Salmonella choleraesui... [more]
RL1_SALA41.634e-1833.9250S ribosomal protein L1 OS=Salmonella agona (stra... [more]
RL1_RHILO1.634e-1838.3650S ribosomal protein L1 OS=Rhizobium loti GN=rplA... [more]
RL1_MYCMS1.634e-1837.9350S ribosomal protein L1 OS=Mycoplasma mycoides su... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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