DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CAMJD (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.329e-23
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            +KR  E+    +  KEY L  AI  +K + S KF ET E   +LN+DP++ DQ +R +V LP GTGK V+VAV A+  K DEAKNA AD+VG DDL+E+I++
Sbjct:    5 AKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEIQK 106          

HSP 2 Score: 25.409 bits (54), Expect = 2.329e-23
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ QA
Sbjct:  128 GRILGPKGLMPNPKTGTVTMDVAQA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CAMJ8 (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.329e-23
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            +KR  E+    +  KEY L  AI  +K + S KF ET E   +LN+DP++ DQ +R +V LP GTGK V+VAV A+  K DEAKNA AD+VG DDL+E+I++
Sbjct:    5 AKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEIQK 106          

HSP 2 Score: 25.409 bits (54), Expect = 2.329e-23
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ QA
Sbjct:  128 GRILGPKGLMPNPKTGTVTMDVAQA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THEM4 (50S ribosomal protein L1 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.877e-23
Identity = 66/166 (39.76%), Postives = 95/166 (57.23%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-----IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            SKR+ E++ L +  KEYDL  A+ L K++++ KF ET E H + NID + +DQQ+R+T+SLP GTGK V+V V A+GEK +EAK A AD VG +DL E+I++         +   + +  I         K L PR     PK G V        K FK+ +++ R
Sbjct:    5 SKRYNEVRKLVDRTKEYDLNEAVDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTISLPHGTGKEVRVLVFAKGEKAEEAKKAGADYVGAEDLAEKIQKEGFLDFDVAIATPDMMKIIG-----RLGKILGPRGLMPNPKAGTVTNDVAAAVKDFKKGRMEIR 165          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNP6 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.877e-23
Identity = 70/173 (40.46%), Postives = 99/173 (57.23%), Query Frame = 3
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKF---LEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            R  S+R  E+Q   E +  Y+   A++LLK+ ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG++++VAV A+GEK  EAK A AD+ G ++LIE+I +             +     P   K    L PR     PK G V     +   +FK  K+++R +  G+
Sbjct:    3 RKVSRRLQELQKKVEDRA-YEPLAALNLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQTIRVAVIARGEKVAEAKAAGADIAGSEELIEEISKGFLDFDLLIATPDV----MPQVAKLGRQLGPRGLMPSPKGGTVTFDLEQAVNEFKAGKLEFRADRTGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNE7 (50S ribosomal protein L1 OS=Synechococcus elongatus (strain PCC 7942) GN=rplA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.877e-23
Identity = 70/173 (40.46%), Postives = 99/173 (57.23%), Query Frame = 3
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKF---LEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            R  S+R  E+Q   E +  Y+   A++LLK+ ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG++++VAV A+GEK  EAK A AD+ G ++LIE+I +             +     P   K    L PR     PK G V     +   +FK  K+++R +  G+
Sbjct:    3 RKVSRRLQELQKKVEDRA-YEPLAALNLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQTIRVAVIARGEKVAEAKAAGADIAGSEELIEEISKGFLDFDLLIATPDV----MPQVAKLGRQLGPRGLMPSPKGGTVTFDLEQAINEFKAGKLEFRADRTGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PETMO (50S ribosomal protein L1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.877e-23
Identity = 69/167 (41.32%), Postives = 91/167 (54.49%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-----IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN 986
            K++ E+  L + +K YD+  A+ L+K+ S TKF  T E H  L IDPK  DQ +R TVSLPKGTGK+V+V V A+GEK  +AK A AD VG DDLIE+I           +   + +  I         K L PR     PK G V     +  K+FK  KV+ R +
Sbjct:    6 KKYKEVLKLVDKQKNYDIDEALDLVKKTSYTKFDGTVELHVLLGIDPKKGDQNVRGTVSLPKGTGKNVRVLVFAEGEKAAQAKQAGADFVGSDDLIEKINNEGWTDFDVAIATPDIMRKIG-----RLGKVLGPRGLMPSPKAGTVTDDVAQAVKEFKAGKVEVRND 167          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_PORPU (50S ribosomal protein L1, chloroplastic OS=Porphyra purpurea GN=rpl1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.877e-23
Identity = 69/168 (41.07%), Postives = 94/168 (55.95%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            ++ R L+    +   K Y L  A+++L+  S+ KF ETAEAH  L ++PKY DQQLRATV LPKGTGK VKVAV A+GEK  EA NA AD+ G ++LI++I +      +      I         + L PR     PK G V     +   +FK  KV+YR +  G+
Sbjct:    3 KTSRRLKTLKSKVDPKLYSLNEAVTILRATSNAKFKETAEAHISLGLNPKYADQQLRATVILPKGTGKLVKVAVIAKGEKLTEAMNAGADISGSEELIDEISKGRLDFDKLIATPDIMP-LIAKLGRVLGPRGLMPSPKAGTVTLDITKSINEFKGGKVEYRVDRTGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNJB (50S ribosomal protein L1 OS=Synechococcus sp. GN=rplA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.757e-23
Identity = 72/172 (41.86%), Postives = 99/172 (57.56%), Query Frame = 3
Query:  489 RTRSKRFLEIQNLREGKKE--YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            R  SKR   +Q LRE  K   Y  + A++L+K+ ++ KF E AE H RL IDPKY DQQLR TV LP+GTG+ ++VAV A+GEK  EA+NA AD VG +DLIE+I + +           +   +     + L PR     PK G V     +  K+FK  K++YR +  G+
Sbjct:    3 RKLSKR---MQALREKVKPIAYAPEAALALMKETATAKFEEAAEVHIRLGIDPKYADQQLRTTVVLPRGTGQEIRVAVIARGEKVVEAQNAGADRVGYEDLIEEISKGMMDFDLLIATPDVMP-QVAKLGRLLGPRGLMPSPKGGTVTMDLAQAIKEFKAGKLEYRADRTGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.757e-23
Identity = 73/168 (43.45%), Postives = 97/168 (57.74%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            S+R  +IQ   E  + Y    A++LLK++++ KFTETAEAH  L ID KY DQQLR T+ LPKGTGK V++AV AQGEK +EA  A ADL G +DLI+ I +    L     + T +      K  K L PR     PK G V         +FK+ K++YR +  G+
Sbjct:    5 SQRVKKIQTKVE-LRPYKGTEALNLLKELATAKFTETAEAHISLKIDTKYADQQLRTTLVLPKGTGKKVRIAVVAQGEKINEALAAGADLAGAEDLIQNIMK--GDLDFDRLIATPDMMPAIAKLGKVLGPRGLMPSPKSGTVTADIKEAIDEFKKGKLEYRADKSGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNJA (50S ribosomal protein L1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.907e-23
Identity = 72/172 (41.86%), Postives = 98/172 (56.98%), Query Frame = 3
Query:  489 RTRSKRFLEIQNLREGKKE--YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            R  SKR   +Q LRE  K   Y    A++L+K+ ++ KF E AE H RL IDPKY DQQLR TV LP+GTG+ ++VAV A+GEK  EA+NA AD VG +DLIE+I + +           +   +     + L PR     PK G V     +  K+FK  K++YR +  G+
Sbjct:    3 RKLSKR---MQALREKVKPIAYPPAEALALMKETATAKFDEAAEVHIRLGIDPKYADQQLRTTVVLPRGTGQEIRVAVIARGEKVTEAQNAGADRVGFEDLIEEIGKGVIDFDLLIATPDVMP-QVAKLGRLLGPRGLMPSPKGGTVTMDLAQAIKEFKAGKLEYRADKTGI 170          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CAMJD2.329e-2350.0050S ribosomal protein L1 OS=Campylobacter jejuni s... [more]
RL1_CAMJ82.329e-2350.0050S ribosomal protein L1 OS=Campylobacter jejuni s... [more]
RL1_THEM42.877e-2339.7650S ribosomal protein L1 OS=Thermosipho melanesien... [more]
RL1_SYNP62.877e-2340.4650S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SYNE72.877e-2340.4650S ribosomal protein L1 OS=Synechococcus elongatu... [more]
RL1_PETMO2.877e-2341.3250S ribosomal protein L1 OS=Petrotoga mobilis (str... [more]
RK1_PORPU2.877e-2341.0750S ribosomal protein L1, chloroplastic OS=Porphyr... [more]
RL1_SYNJB3.757e-2341.8650S ribosomal protein L1 OS=Synechococcus sp. GN=r... [more]
RK1_RHDSA3.757e-2343.4550S ribosomal protein L1, chloroplastic OS=Rhodomo... [more]
RL1_SYNJA4.907e-2341.8650S ribosomal protein L1 OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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