DY257117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CAMJD (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rplA PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.329e-23 Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803 +KR E+ + KEY L AI +K + S KF ET E +LN+DP++ DQ +R +V LP GTGK V+VAV A+ K DEAKNA AD+VG DDL+E+I++ Sbjct: 5 AKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEIQK 106 HSP 2 Score: 25.409 bits (54), Expect = 2.329e-23 Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 G+I GL+PN K GT T ++ QA Sbjct: 128 GRILGPKGLMPNPKTGTVTMDVAQA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CAMJ8 (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rplA PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.329e-23 Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803 +KR E+ + KEY L AI +K + S KF ET E +LN+DP++ DQ +R +V LP GTGK V+VAV A+ K DEAKNA AD+VG DDL+E+I++ Sbjct: 5 AKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEIQK 106 HSP 2 Score: 25.409 bits (54), Expect = 2.329e-23 Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 G+I GL+PN K GT T ++ QA Sbjct: 128 GRILGPKGLMPNPKTGTVTMDVAQA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THEM4 (50S ribosomal protein L1 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplA PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.877e-23 Identity = 66/166 (39.76%), Postives = 95/166 (57.23%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-----IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 SKR+ E++ L + KEYDL A+ L K++++ KF ET E H + NID + +DQQ+R+T+SLP GTGK V+V V A+GEK +EAK A AD VG +DL E+I++ + + + I K L PR PK G V K FK+ +++ R Sbjct: 5 SKRYNEVRKLVDRTKEYDLNEAVDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTISLPHGTGKEVRVLVFAKGEKAEEAKKAGADYVGAEDLAEKIQKEGFLDFDVAIATPDMMKIIG-----RLGKILGPRGLMPNPKAGTVTNDVAAAVKDFKKGRMEIR 165
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNP6 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplA PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.877e-23 Identity = 70/173 (40.46%), Postives = 99/173 (57.23%), Query Frame = 3 Query: 489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKF---LEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 R S+R E+Q E + Y+ A++LLK+ ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG++++VAV A+GEK EAK A AD+ G ++LIE+I + + P K L PR PK G V + +FK K+++R + G+ Sbjct: 3 RKVSRRLQELQKKVEDRA-YEPLAALNLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQTIRVAVIARGEKVAEAKAAGADIAGSEELIEEISKGFLDFDLLIATPDV----MPQVAKLGRQLGPRGLMPSPKGGTVTFDLEQAVNEFKAGKLEFRADRTGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNE7 (50S ribosomal protein L1 OS=Synechococcus elongatus (strain PCC 7942) GN=rplA PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.877e-23 Identity = 70/173 (40.46%), Postives = 99/173 (57.23%), Query Frame = 3 Query: 489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKF---LEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 R S+R E+Q E + Y+ A++LLK+ ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG++++VAV A+GEK EAK A AD+ G ++LIE+I + + P K L PR PK G V + +FK K+++R + G+ Sbjct: 3 RKVSRRLQELQKKVEDRA-YEPLAALNLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQTIRVAVIARGEKVAEAKAAGADIAGSEELIEEISKGFLDFDLLIATPDV----MPQVAKLGRQLGPRGLMPSPKGGTVTFDLEQAINEFKAGKLEFRADRTGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PETMO (50S ribosomal protein L1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplA PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.877e-23 Identity = 69/167 (41.32%), Postives = 91/167 (54.49%), Query Frame = 3 Query: 501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-----IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN 986 K++ E+ L + +K YD+ A+ L+K+ S TKF T E H L IDPK DQ +R TVSLPKGTGK+V+V V A+GEK +AK A AD VG DDLIE+I + + + I K L PR PK G V + K+FK KV+ R + Sbjct: 6 KKYKEVLKLVDKQKNYDIDEALDLVKKTSYTKFDGTVELHVLLGIDPKKGDQNVRGTVSLPKGTGKNVRVLVFAEGEKAAQAKQAGADFVGSDDLIEKINNEGWTDFDVAIATPDIMRKIG-----RLGKVLGPRGLMPSPKAGTVTDDVAQAVKEFKAGKVEVRND 167
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_PORPU (50S ribosomal protein L1, chloroplastic OS=Porphyra purpurea GN=rpl1 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.877e-23 Identity = 69/168 (41.07%), Postives = 94/168 (55.95%), Query Frame = 3 Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 ++ R L+ + K Y L A+++L+ S+ KF ETAEAH L ++PKY DQQLRATV LPKGTGK VKVAV A+GEK EA NA AD+ G ++LI++I + + I + L PR PK G V + +FK KV+YR + G+ Sbjct: 3 KTSRRLKTLKSKVDPKLYSLNEAVTILRATSNAKFKETAEAHISLGLNPKYADQQLRATVILPKGTGKLVKVAVIAKGEKLTEAMNAGADISGSEELIDEISKGRLDFDKLIATPDIMP-LIAKLGRVLGPRGLMPSPKAGTVTLDITKSINEFKGGKVEYRVDRTGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNJB (50S ribosomal protein L1 OS=Synechococcus sp. GN=rplA PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 3.757e-23 Identity = 72/172 (41.86%), Postives = 99/172 (57.56%), Query Frame = 3 Query: 489 RTRSKRFLEIQNLREGKKE--YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 R SKR +Q LRE K Y + A++L+K+ ++ KF E AE H RL IDPKY DQQLR TV LP+GTG+ ++VAV A+GEK EA+NA AD VG +DLIE+I + + + + + L PR PK G V + K+FK K++YR + G+ Sbjct: 3 RKLSKR---MQALREKVKPIAYAPEAALALMKETATAKFEEAAEVHIRLGIDPKYADQQLRTTVVLPRGTGQEIRVAVIARGEKVVEAQNAGADRVGYEDLIEEISKGMMDFDLLIATPDVMP-QVAKLGRLLGPRGLMPSPKGGTVTMDLAQAIKEFKAGKLEYRADRTGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 3.757e-23 Identity = 73/168 (43.45%), Postives = 97/168 (57.74%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 S+R +IQ E + Y A++LLK++++ KFTETAEAH L ID KY DQQLR T+ LPKGTGK V++AV AQGEK +EA A ADL G +DLI+ I + L + T + K K L PR PK G V +FK+ K++YR + G+ Sbjct: 5 SQRVKKIQTKVE-LRPYKGTEALNLLKELATAKFTETAEAHISLKIDTKYADQQLRTTLVLPKGTGKKVRIAVVAQGEKINEALAAGADLAGAEDLIQNIMK--GDLDFDRLIATPDMMPAIAKLGKVLGPRGLMPSPKSGTVTADIKEAIDEFKKGKLEYRADKSGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNJA (50S ribosomal protein L1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplA PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 4.907e-23 Identity = 72/172 (41.86%), Postives = 98/172 (56.98%), Query Frame = 3 Query: 489 RTRSKRFLEIQNLREGKKE--YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 R SKR +Q LRE K Y A++L+K+ ++ KF E AE H RL IDPKY DQQLR TV LP+GTG+ ++VAV A+GEK EA+NA AD VG +DLIE+I + + + + + L PR PK G V + K+FK K++YR + G+ Sbjct: 3 RKLSKR---MQALREKVKPIAYPPAEALALMKETATAKFDEAAEVHIRLGIDPKYADQQLRTTVVLPRGTGQEIRVAVIARGEKVTEAQNAGADRVGFEDLIEEIGKGVIDFDLLIATPDVMP-QVAKLGRLLGPRGLMPSPKGGTVTMDLAQAIKEFKAGKLEYRADKTGI 170 The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bpback to top |