DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ESCF3 (50S ribosomal protein L1 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ECOUT (50S ribosomal protein L1 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ECOSM (50S ribosomal protein L1 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ECOSE (50S ribosomal protein L1 OS=Escherichia coli (strain SE11) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ECOLU (50S ribosomal protein L1 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ECOLI (50S ribosomal protein L1 OS=Escherichia coli (strain K12) GN=rplA PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ECOLC (50S ribosomal protein L1 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ECOL6 (50S ribosomal protein L1 OS=Escherichia coli O6 GN=rplA PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ECOL5 (50S ribosomal protein L1 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ECOHS (50S ribosomal protein L1 OS=Escherichia coli O9:H4 (strain HS) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.634e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+YD+  AI+LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+LVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_ESCF31.634e-1833.9250S ribosomal protein L1 OS=Escherichia fergusonii... [more]
RL1_ECOUT1.634e-1833.9250S ribosomal protein L1 OS=Escherichia coli (stra... [more]
RL1_ECOSM1.634e-1833.9250S ribosomal protein L1 OS=Escherichia coli (stra... [more]
RL1_ECOSE1.634e-1833.9250S ribosomal protein L1 OS=Escherichia coli (stra... [more]
RL1_ECOLU1.634e-1833.9250S ribosomal protein L1 OS=Escherichia coli O17:K... [more]
RL1_ECOLI1.634e-1833.9250S ribosomal protein L1 OS=Escherichia coli (stra... [more]
RL1_ECOLC1.634e-1833.9250S ribosomal protein L1 OS=Escherichia coli (stra... [more]
RL1_ECOL61.634e-1833.9250S ribosomal protein L1 OS=Escherichia coli O6 GN... [more]
RL1_ECOL51.634e-1833.9250S ribosomal protein L1 OS=Escherichia coli O6:K1... [more]
RL1_ECOHS1.634e-1833.9250S ribosomal protein L1 OS=Escherichia coli O9:H4... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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