DY257117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHEON (50S ribosomal protein L1 OS=Shewanella oneidensis GN=rplA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18 Identity = 58/171 (33.92%), Postives = 89/171 (52.05%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 +KR I+ +G K Y++ A++LLK++++ KF E+ + L IDP+ +DQ +R LP GTG+ V+VAV QG + AK A A+LVG DDL E+IK + + + + + L PR PK G V P K K +V+YR + +G+ Sbjct: 5 TKRMRVIREKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAAKAAGAELVGMDDLAEKIKAGEMNFDVVIASPDAMRVVG-----MLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHELP (50S ribosomal protein L1 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rplA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18 Identity = 57/171 (33.33%), Postives = 87/171 (50.88%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 +KR I+ E K YD+ A++LLK++++ KF E+ + L +DP+ +DQ +R LP GTG+ V+VAV QG D AK A A+LVG D+L Q+K + + + + + L PR PK G V P K K +V+YR + +G+ Sbjct: 5 TKRARLIREKVEATKSYDINEAVALLKELATAKFVESVDVAVNLGVDPRKSDQNVRGATVLPHGTGREVRVAVFTQGANADAAKEAGAELVGMDELAAQVKAGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SALG2 (50S ribosomal protein L1 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18 Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 +KR I+ + K+YD+ AI+LLK++++ KF E+ + L ID + +DQ +R LP GTG+SV+VAV QG + AK A A+LVG +DL +QIK+ + + + + + L PR PK+G V P K K +V+YR + +G+ Sbjct: 5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----LLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHOSK (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18 Identity = 60/146 (41.10%), Postives = 86/146 (58.90%), Query Frame = 3 Query: 489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLV 923 RTRS R + GK ++ A++L+KQ +S KF ET E L +DP++ DQ +R V+LP GTGK+V+VAV A+G K DEAK A AD+VG +DL+E I+ ++ C+ T + + K L PR+ PK+G V Sbjct: 7 RTRSAREAFV-----GKDLISVEDAVALIKQAASAKFDETLEVAMNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLMETIQS--GKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTV 145
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHOS4 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18 Identity = 60/146 (41.10%), Postives = 86/146 (58.90%), Query Frame = 3 Query: 489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLV 923 RTRS R + GK ++ A++L+KQ +S KF ET E L +DP++ DQ +R V+LP GTGK+V+VAV A+G K DEAK A AD+VG +DL+E I+ ++ C+ T + + K L PR+ PK+G V Sbjct: 7 RTRSAREAFV-----GKDLISVEDAVALIKQAASAKFDETLEVAMNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLMETIQS--GKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTV 145
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHOS1 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rplA1 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18 Identity = 60/146 (41.10%), Postives = 86/146 (58.90%), Query Frame = 3 Query: 489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLV 923 RTRS R + GK ++ A++L+KQ +S KF ET E L +DP++ DQ +R V+LP GTGK+V+VAV A+G K DEAK A AD+VG +DL+E I+ ++ C+ T + + K L PR+ PK+G V Sbjct: 7 RTRSAREAFV-----GKDLISVEDAVALIKQAASAKFDETLEVAMNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLMETIQS--GKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTV 145
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PARL1 (50S ribosomal protein L1 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18 Identity = 60/159 (37.74%), Postives = 88/159 (55.35%), Query Frame = 3 Query: 516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 I+ REG KK Y L A+ ++K +S KF ET E L +DP++ DQ +R V+LP G+G++V+VAV A+G+K D+A+ A AD+VG DDL E ++ + C+ T + + K L PR PK+G V P K K V++R Sbjct: 8 IEKAREGIDRKKTYGLDEAVKMVKDRASVKFDETIEVAIALGVDPRHADQMVRGVVALPSGSGRTVRVAVFAKGDKADQARAAGADIVGDDDLAEIVQS--GKIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTPDVAEAVKAAKGGAVEFR 164
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_NAUPA (50S ribosomal protein L1 OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=rplA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18 Identity = 60/164 (36.59%), Postives = 88/164 (53.66%), Query Frame = 3 Query: 489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 + SKR+ E+ + K Y+LK A +K++ S KF ET E +L +DP++ DQ +R +V LP GTGK+VKVAV A+G K DEAK A AD+VG ++++E I+ + G + K L P+ PK G V + K K +V +R Sbjct: 3 KKHSKRYQELLK-KIDKDVYNLKEAAEKVKELKSAKFDETVELALKLGVDPRHADQMIRGSVVLPHGTGKTVKVAVLAKGAKADEAKEAGADIVGEEEVLEMIQNGNLDFDILIATPDMMG-KLGRFGKILGPKGLMPNPKTGTVTMDVAQAVKNAKAGQVNFR 164
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_JANMA (50S ribosomal protein L1 OS=Janthinobacterium sp. (strain Marseille) GN=rplA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18 Identity = 64/174 (36.78%), Postives = 89/174 (51.15%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR + + K Y A++L+K+ +S KF E+ + +L +D K +DQ +R +V LP GTGKSV+VAV A GEK +AK A AD+VG DDL EQIK I + T+ + L PR PK+G V P K K +V+YR + G+ Sbjct: 5 SKRVKAFKAKVDRTKAYPFDNAVALIKECASAKFDESIDISVQLGVDAKKSDQVVRGSVVLPAGTGKSVRVAVFATGEKAGQAKAAGADIVGMDDLAEQIKAGNMPFDIVIASPDTMRIVGTLG--------QILGPRGMMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKAGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HALOH (50S ribosomal protein L1 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18 Identity = 62/168 (36.90%), Postives = 90/168 (53.57%), Query Frame = 3 Query: 501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANC---LHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HG 995 KR+ E + + +K Y A+ L+K ++S F ET + +L +DPK+ DQ +R V LPKGTGK VKV V A+GEK EA+ A AD+VG DDL E+IK A + ++ G + L P+ PK+G V + K K K++YR + +G Sbjct: 6 KRYQESRKKVDREKLYSPADALELVKDIASANFDETVDLAVKLGVDPKHADQNVRGAVVLPKGTGKEVKVIVFAKGEKAKEAEEAGADVVGADDLAEKIKGGWLDFDVAIATPDMMSVVG----KLGRILGPKGLMPNPKVGTVTFELEKAVKDAKAGKIEYRVDKNG 169 The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bpback to top |