DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_EDWI9 (50S ribosomal protein L1 OS=Edwardsiella ictaluri (strain 93-146) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18
Identity = 57/175 (32.57%), Postives = 92/175 (52.57%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGLCPHT 1010
            +KR   I+   +  K+YD+  A++LL+++++ KF E+ +    L ID + +DQ +R    LP GTG++V+VAV  QG   + AK A ADLVG +DL +QIK+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+   T
Sbjct:    5 TKRMRVIREKVDATKQYDINEAVALLQELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRTVRVAVFTQGPNAEAAKAAGADLVGMEDLADQIKKGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHST 174
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BORA1 (50S ribosomal protein L1 OS=Bordetella avium (strain 197N) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18
Identity = 63/171 (36.84%), Postives = 92/171 (53.80%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   I    +  K Y +  A++L+K+ ++ KF E+ +   +L IDPK +DQ +R +V LP GTGKSV+VAV AQGEK + A+ A A++VG DDL EQIK         +   + +  +         + L PR     PK+G V P      K  K  +V+YR +  G+
Sbjct:    5 SKRAAAIAQKIDRTKLYPVAEALTLVKETATAKFDESIDVAVQLGIDPKKSDQLVRGSVVLPAGTGKSVRVAVFAQGEKAEAARAAGAEVVGLDDLAEQIKAGQMDFDVVIASPDTMRVVGA-----LGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKAGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ACTSZ (50S ribosomal protein L1 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18
Identity = 56/171 (32.75%), Postives = 90/171 (52.63%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K+   I+   +  K Y++  A++LLKQ ++ KF E+ +    L IDP+ +DQ +R    LP GTG++V+VAV  QG   + AK A ADL+G +DL EQ+K+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKKMKAIKAGVDSTKAYEINEALALLKQFATAKFNESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRTVRVAVFTQGANAEAAKEAGADLIGMEDLAEQVKKGEMDFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKSGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BACHD (50S ribosomal protein L1 OS=Bacillus halodurans GN=rplA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.215e-18
Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = 3 
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            R K++LE   L +  + Y ++ A+ L+K+ S  KF ET E   RL +DPK  DQQ+R  V LP GTGK+ +V V A+GEK  EA+ A AD VG +D I +I +
Sbjct:    4 RGKKYLEAVKLIDRDQAYQVEEALELVKKASVAKFDETVEVAVRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGDEDCINKISQ 106

HSP 2 Score: 22.7126 bits (47), Expect = 3.215e-18
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K GT T  + +A
Sbjct:  128 GRVLGPKGLMPNPKTGTVTFEVEKA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOBM (50S ribosomal protein L1 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-18
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            K++ E   L +    Y ++ AI L+ + S  KF ET E   RL +DP++ DQQ+R  V LP GTGK+V+V V A+G+K +EA+ A AD VG ++L+E+I++
Sbjct:    3 KKYTESVKLVDKNALYTVQEAIELVTKTSKAKFDETVELAVRLGVDPRHADQQVRGAVVLPHGTGKTVRVLVFAKGDKVNEAQEAGADFVGAEELVEKIQK 103

HSP 2 Score: 23.483 bits (49), Expect = 3.216e-18
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++ +A
Sbjct:  126 GRVLGPKGLMPNPKSGTVTFDVAKA 150
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOBL (50S ribosomal protein L1 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-18
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            K++ E   L +    Y ++ AI L+ + S  KF ET E   RL +DP++ DQQ+R  V LP GTGK+V+V V A+G+K +EA+ A AD VG ++L+E+I++
Sbjct:    3 KKYTESVKLVDKNTLYTVQEAIELVTKTSKAKFDETVELAVRLGVDPRHADQQVRGAVVLPHGTGKTVRVLVFAKGDKVNEAQEAGADFVGAEELVEKIQK 103

HSP 2 Score: 23.483 bits (49), Expect = 3.216e-18
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++ +A
Sbjct:  126 GRVLGPKGLMPNPKSGTVTFDVAKA 150
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOBK (50S ribosomal protein L1 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-18
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            K++ E   L +    Y ++ AI L+ + S  KF ET E   RL +DP++ DQQ+R  V LP GTGK+V+V V A+G+K +EA+ A AD VG ++L+E+I++
Sbjct:    3 KKYTESVKLVDKNTLYTVQEAIELVTKTSKAKFDETVELAVRLGVDPRHADQQVRGAVVLPHGTGKTVRVLVFAKGDKVNEAQEAGADFVGAEELVEKIQK 103

HSP 2 Score: 23.483 bits (49), Expect = 3.216e-18
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++ +A
Sbjct:  126 GRVLGPKGLMPNPKSGTVTFDVAKA 150
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOBJ (50S ribosomal protein L1 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-18
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            K++ E   L +    Y ++ AI L+ + S  KF ET E   RL +DP++ DQQ+R  V LP GTGK+V+V V A+G+K +EA+ A AD VG ++L+E+I++
Sbjct:    3 KKYTESVKLVDKNTLYTVQEAIELVTKTSKAKFDETVELAVRLGVDPRHADQQVRGAVVLPHGTGKTVRVLVFAKGDKVNEAQEAGADFVGAEELVEKIQK 103

HSP 2 Score: 23.483 bits (49), Expect = 3.216e-18
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++ +A
Sbjct:  126 GRVLGPKGLMPNPKSGTVTFDVAKA 150
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOBH (50S ribosomal protein L1 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-18
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            K++ E   L +    Y ++ AI L+ + S  KF ET E   RL +DP++ DQQ+R  V LP GTGK+V+V V A+G+K +EA+ A AD VG ++L+E+I++
Sbjct:    3 KKYTESVKLVDKNTLYTVQEAIELVTKTSKAKFDETVELAVRLGVDPRHADQQVRGAVVLPHGTGKTVRVLVFAKGDKVNEAQEAGADFVGAEELVEKIQK 103

HSP 2 Score: 23.483 bits (49), Expect = 3.216e-18
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++ +A
Sbjct:  126 GRVLGPKGLMPNPKSGTVTFDVAKA 150
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOB6 (50S ribosomal protein L1 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-18
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            K++ E   L +    Y ++ AI L+ + S  KF ET E   RL +DP++ DQQ+R  V LP GTGK+V+V V A+G+K +EA+ A AD VG ++L+E+I++
Sbjct:    3 KKYTESVKLVDKNTLYTVQEAIELVTKTSKAKFDETVELAVRLGVDPRHADQQVRGAVVLPHGTGKTVRVLVFAKGDKVNEAQEAGADFVGAEELVEKIQK 103

HSP 2 Score: 23.483 bits (49), Expect = 3.216e-18
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++ +A
Sbjct:  126 GRVLGPKGLMPNPKSGTVTFDVAKA 150
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_EDWI92.787e-1832.5750S ribosomal protein L1 OS=Edwardsiella ictaluri ... [more]
RL1_BORA12.787e-1836.8450S ribosomal protein L1 OS=Bordetella avium (stra... [more]
RL1_ACTSZ2.787e-1832.7550S ribosomal protein L1 OS=Actinobacillus succino... [more]
RL1_BACHD3.215e-1845.6350S ribosomal protein L1 OS=Bacillus halodurans GN... [more]
RL1_CLOBM3.216e-1843.5650S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOBL3.216e-1843.5650S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOBK3.216e-1843.5650S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOBJ3.216e-1843.5650S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOBH3.216e-1843.5650S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOB63.216e-1843.5650S ribosomal protein L1 OS=Clostridium botulinum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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