DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOB1 (50S ribosomal protein L1 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-18
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            K++ E   L +    Y ++ AI L+ + S  KF ET E   RL +DP++ DQQ+R  V LP GTGK+V+V V A+G+K +EA+ A AD VG ++L+E+I++
Sbjct:    3 KKYTESVKLVDKNTLYTVQEAIELVTKTSKAKFDETVELAVRLGVDPRHADQQVRGAVVLPHGTGKTVRVLVFAKGDKVNEAQEAGADFVGAEELVEKIQK 103          

HSP 2 Score: 23.483 bits (49), Expect = 3.216e-18
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++ +A
Sbjct:  126 GRVLGPKGLMPNPKSGTVTFDVAKA 150          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_VIBSL (50S ribosomal protein L1 OS=Vibrio splendidus (strain LGP32) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.639e-18
Identity = 59/177 (33.33%), Postives = 91/177 (51.41%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR----------RIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I++  E  KEY++  A++LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+ ++VAV  QG   + AK A AD+VG +DL EQ+K+              ++    L TI G           PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIRDKVEVTKEYEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFTQGANAEAAKAAGADIVGMEDLAEQVKKGEMNFDVVVASPDAMRVVGQLGTILG-----------PRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PECCP (50S ribosomal protein L1 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.639e-18
Identity = 57/171 (33.33%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I++  +  K+YD+  A++LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+ VG +DL EQIK+   G    +   + +  +         + L PR     PK+G V P         K  +V+YR + +G+
Sbjct:    5 TKRMRVIRDKVDVTKQYDINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAEFVGMEDLAEQIKKGEMGFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVNNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PASMU (50S ribosomal protein L1 OS=Pasteurella multocida GN=rplA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.639e-18
Identity = 57/171 (33.33%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K+   I+   +  K Y++  AI++LKQ ++ KF E+ +    L IDP+ +DQ +R    LP GTG+SV+VAV  QG   + AK A ADLVG +DL E +K+        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKKMKSIKAAVDSTKAYEINEAIAVLKQFATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKEAGADLVGMEDLAELVKKGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKVGTVTPNVADAVKNAKSGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ONYPE (50S ribosomal protein L1 OS=Onion yellows phytoplasma GN=rplA PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.639e-18
Identity = 60/162 (37.04%), Postives = 84/162 (51.85%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            R K++L    + + KK Y L+ AISL KQ    KF    E  F LN+DPK  DQ LR  + LP GTGK +KVAV A+GE+  +A+ A+AD VG  DLI++I +             +   +     + L P+     PK G V     +  K+ K  K++YR
Sbjct:    3 RGKKYLASLQMFDVKKTYPLQEAISLAKQTQVAKFDAAVECAFHLNLDPKKVDQNLRGALVLPHGTGKVLKVAVLAKGEQAKQAQEAQADYVGDQDLIDKIAKNWFDFDVLVATPEMMP-QLSKLGRLLGPKGLMPNPKTGTVTNDVLQAVKEIKNGKIEYR 163          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_MYCCT (50S ribosomal protein L1 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.639e-18
Identity = 65/174 (37.36%), Postives = 86/174 (49.43%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR--------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HG 995
            SKRF E  +  E  K Y L  A+ L KQ ++TKF  T E  F LNIDP+  DQQ+R  V LP GTGK+ +V V     K  EA+ A+AD+VGG++LI +IK          +   +    L  I         K L P+     PK G V     +     K+ KV+YR +  G
Sbjct:    5 SKRFKEALSKVEKNKVYPLNKALDLAKQTATTKFDSTVEVAFNLNIDPRKADQQIRGAVVLPAGTGKTQRVLV-LTNTKTKEAEQAKADIVGGEELINRIKNENWFDFDIIVATPEMMAKLGAIG--------KILGPKGLMPNPKTGTVTMDVAKAVDDIKKGKVEYRADKEG 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ANASK (50S ribosomal protein L1 OS=Anaeromyxobacter sp. (strain K) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.639e-18
Identity = 58/147 (39.46%), Postives = 82/147 (55.78%), Query Frame = 3
Query:  540 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            K Y L  A+SL+KQ ++ KF ET +A   L +DPK+ DQ +R  V LP G GK+V++AV A+G+K  EA+ A AD+VG +DL E+I+       +      + G       K L PR     PK+G V     R  K+ K  KV++R
Sbjct:   19 KRYKLDEAMSLVKQTATKKFDETVDASINLGVDPKHADQVVRGAVVLPHGMGKTVRLAVFAKGDKAKEAQEAGADIVGAEDLAEKIQGGFMDFDKLIATPDMMG-VVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ANADE (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.639e-18
Identity = 58/147 (39.46%), Postives = 82/147 (55.78%), Query Frame = 3
Query:  540 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            K Y L  A+SL+KQ ++ KF ET +A   L +DPK+ DQ +R  V LP G GK+V++AV A+G+K  EA+ A AD+VG +DL E+I+       +      + G       K L PR     PK+G V     R  K+ K  KV++R
Sbjct:   19 KRYKLDEAMSLVKQTATKKFDETVDASINLGVDPKHADQVVRGAVVLPHGMGKTVRLAVFAKGDKAKEAQEAGADIVGAEDLAEKIQGGFMDFDKLIATPDMMG-VVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ANAD2 (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.639e-18
Identity = 58/147 (39.46%), Postives = 82/147 (55.78%), Query Frame = 3
Query:  540 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            K Y L  A+SL+KQ ++ KF ET +A   L +DPK+ DQ +R  V LP G GK+V++AV A+G+K  EA+ A AD+VG +DL E+I+       +      + G       K L PR     PK+G V     R  K+ K  KV++R
Sbjct:   19 KRYKLDEAMSLVKQTATKKFDETVDASINLGVDPKHADQVVRGAVVLPHGMGKTVRLAVFAKGDKAKEAQEAGADIVGAEDLAEKIQGGFMDFDKLIATPDMMG-VVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CHLAD (50S ribosomal protein L1 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            K++L      +  + Y    AI+L+K+ S TKF  T EAH RL IDP++ DQ +R TV+LP GTGK+V+V V AQGE    A +A AD  G DDLI +I R
Sbjct:    6 KKYLAALAKVDRSRFYTPAEAIALVKETSYTKFDATVEAHLRLGIDPRHADQNIRTTVALPHGTGKTVRVLVFAQGEALQTALDAGADYAGSDDLIARIDR 106          

HSP 2 Score: 20.4014 bits (41), Expect = 4.177e-18
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  890 GLLPNSKAGT 919
            GL+PN K+GT
Sbjct:  136 GLMPNPKSGT 145          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CLOB13.216e-1843.5650S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_VIBSL3.639e-1833.3350S ribosomal protein L1 OS=Vibrio splendidus (str... [more]
RL1_PECCP3.639e-1833.3350S ribosomal protein L1 OS=Pectobacterium carotov... [more]
RL1_PASMU3.639e-1833.3350S ribosomal protein L1 OS=Pasteurella multocida ... [more]
RL1_ONYPE3.639e-1837.0450S ribosomal protein L1 OS=Onion yellows phytopla... [more]
RL1_MYCCT3.639e-1837.3650S ribosomal protein L1 OS=Mycoplasma capricolum ... [more]
RL1_ANASK3.639e-1839.4650S ribosomal protein L1 OS=Anaeromyxobacter sp. (... [more]
RL1_ANADE3.639e-1839.4650S ribosomal protein L1 OS=Anaeromyxobacter dehal... [more]
RL1_ANAD23.639e-1839.4650S ribosomal protein L1 OS=Anaeromyxobacter dehal... [more]
RL1_CHLAD4.177e-1848.5150S ribosomal protein L1 OS=Chloroflexus aggregans... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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