DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_LACRJ (50S ribosomal protein L1 OS=Lactobacillus reuteri (strain JCM 1112) GN=rplA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.182e-18
Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 3 
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            + R K++ +     + KKEY +K A+ L+K ++   F  T E  F LN+D K  DQQLR  V LP GTGK   V V A GE    A+ A AD VG DDL+E+I+
Sbjct:    3 KKRGKKYQDALKKVDSKKEYAVKDAVQLVKDIAYANFDSTIEVAFNLNVDTKQADQQLRGAVVLPNGTGKDQTVIVFANGENAKAAQEAGADFVGDDDLVEKIQ 106

HSP 2 Score: 23.483 bits (49), Expect = 4.182e-18
Identity = 10/25 (40.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K GT T ++ +A
Sbjct:  129 GRVLGPKGLMPNPKTGTVTMDVAKA 153
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_GEMAT (50S ribosomal protein L1 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.182e-18
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 3 
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            +T  K+F      R   K Y+ K AI+L+KQM+  KF ET E   RL +DP++ DQ +R TV LP GTGK+++V V A G K  EA+ A AD V G + +++IK
Sbjct:    2 KTNGKKFRAASEQRVLGKSYEAKQAIALVKQMAFAKFDETVEIAIRLGVDPRHADQVVRGTVVLPAGTGKTMRVLVIATGAKVQEAQEAGADFV-GTEFLQKIK 104

HSP 2 Score: 24.6386 bits (52), Expect = 4.182e-18
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN KAGT T ++ +A
Sbjct:  127 GRVLGPRGLMPNPKAGTVTFDVSKA 151
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_VIBVY (50S ribosomal protein L1 OS=Vibrio vulnificus (strain YJ016) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.753e-18
Identity = 58/177 (32.77%), Postives = 91/177 (51.41%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR----------RIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  +EY++  A++LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+ ++VAV AQG   + AK A AD+VG +DL EQ+K+              ++    L TI G           PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDVTREYEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFAQGANAEAAKEAGADIVGMEDLAEQVKKGEMNFDVVVASPDAMRVVGQLGTILG-----------PRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_VIBVU (50S ribosomal protein L1 OS=Vibrio vulnificus GN=rplA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.753e-18
Identity = 58/177 (32.77%), Postives = 91/177 (51.41%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR----------RIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  +EY++  A++LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+ ++VAV AQG   + AK A AD+VG +DL EQ+K+              ++    L TI G           PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDVTREYEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFAQGANAEAAKEAGADIVGMEDLAEQVKKGEMNFDVVVASPDAMRVVGQLGTILG-----------PRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_TOLAT (50S ribosomal protein L1 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.753e-18
Identity = 58/175 (33.14%), Postives = 90/175 (51.43%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGLCPHT 1010
            +KR   I+   +  KEY +  A++LLK++++ KF E+ +    L ID + +DQ +R    LP GTG++V+VAV  QG   + A  A ADLVG +DL EQ+KR        +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+   T
Sbjct:    5 TKRMRVIREKVDATKEYGITEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRTVRVAVFTQGANAEAATAAGADLVGMEDLAEQVKRGELNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHST 174
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHISN (50S ribosomal protein L1 OS=Rhizobium sp. (strain NGR234) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.753e-18
Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 3 
Query:  516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            +Q  REG    K Y L  A++L+K+ ++ KF ET E    L +DP++ DQ +R  V+LP GTG+SV+VAV A+G K DEAK A AD+VG +DL+E ++     +    C+ T +      +  K L PR     PK+G V        K  K   V++R
Sbjct:    8 VQKSREGIDPAKVYGLTEAVTLVKERATAKFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGAKADEAKAAGADVVGAEDLVEIVQG--GKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVTAAVKSSKGGAVEFR 164
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOPS (50S ribosomal protein L1 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.438e-18
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K+++E   L +    Y    A+ L  + +  KF ET E H RL +DP++ DQQ+R  V LP GTGK VKV V A+GEK  EA+ A AD VG D+L+++I+
Sbjct:    3 KKYIESSKLIDKNALYTPAEALELAVKTAKAKFDETIELHVRLGVDPRHADQQVRGAVVLPHGTGKDVKVLVFAKGEKAKEAEAAGADFVGADELVQKIQ 102

HSP 2 Score: 23.0978 bits (48), Expect = 5.438e-18
Identity = 10/25 (40.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++  A
Sbjct:  126 GRVLGPKGLMPNPKSGTVTFDVANA 150
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOPE (50S ribosomal protein L1 OS=Clostridium perfringens GN=rplA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.438e-18
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K+++E   L +    Y    A+ L  + +  KF ET E H RL +DP++ DQQ+R  V LP GTGK VKV V A+GEK  EA+ A AD VG D+L+++I+
Sbjct:    3 KKYIESSKLIDKNALYTPAEALELAVKTAKAKFDETIELHVRLGVDPRHADQQVRGAVVLPHGTGKDVKVLVFAKGEKAKEAEAAGADFVGADELVQKIQ 102

HSP 2 Score: 23.0978 bits (48), Expect = 5.438e-18
Identity = 10/25 (40.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++  A
Sbjct:  126 GRVLGPKGLMPNPKSGTVTFDVANA 150
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOP1 (50S ribosomal protein L1 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.438e-18
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K+++E   L +    Y    A+ L  + +  KF ET E H RL +DP++ DQQ+R  V LP GTGK VKV V A+GEK  EA+ A AD VG D+L+++I+
Sbjct:    3 KKYIESSKLIDKNALYTPAEALELAVKTAKAKFDETIELHVRLGVDPRHADQQVRGAVVLPHGTGKDVKVLVFAKGEKAKEAEAAGADFVGADELVQKIQ 102

HSP 2 Score: 23.0978 bits (48), Expect = 5.438e-18
Identity = 10/25 (40.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++  A
Sbjct:  126 GRVLGPKGLMPNPKSGTVTFDVANA 150
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SPHWW (50S ribosomal protein L1 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.208e-18
Identity = 57/150 (38.00%), Postives = 82/150 (54.67%), Query Frame = 3 
Query:  531 EGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            + +K Y +  AI+L KQ +++KF ET E    L +DP++ DQ +R  V+LPKGTGK V+V V A+G K DEAK A A++VG +DL+E I+       +      + G       K L P+     PKLG V        K  K  +V++R
Sbjct:   16 DSQKLYGVDEAIALAKQNATSKFDETIEVALNLGVDPRHADQMVRGVVTLPKGTGKDVRVGVFARGAKADEAKAAGAEVVGAEDLLETIQGGTVDFDRCIATPDMMG-LVGRLGKILGPKGLMPNPKLGTVTMNVAEAVKAAKGGQVEFR 164
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_LACRJ4.182e-1844.2350S ribosomal protein L1 OS=Lactobacillus reuteri ... [more]
RL1_GEMAT4.182e-1845.1950S ribosomal protein L1 OS=Gemmatimonas aurantiac... [more]
RL1_VIBVY4.753e-1832.7750S ribosomal protein L1 OS=Vibrio vulnificus (str... [more]
RL1_VIBVU4.753e-1832.7750S ribosomal protein L1 OS=Vibrio vulnificus GN=r... [more]
RL1_TOLAT4.753e-1833.1450S ribosomal protein L1 OS=Tolumonas auensis (str... [more]
RL1_RHISN4.753e-1838.3650S ribosomal protein L1 OS=Rhizobium sp. (strain ... [more]
RL1_CLOPS5.438e-1845.0050S ribosomal protein L1 OS=Clostridium perfringen... [more]
RL1_CLOPE5.438e-1845.0050S ribosomal protein L1 OS=Clostridium perfringen... [more]
RL1_CLOP15.438e-1845.0050S ribosomal protein L1 OS=Clostridium perfringen... [more]
RL1_SPHWW6.208e-1838.0050S ribosomal protein L1 OS=Sphingomonas wittichii... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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