DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SACD2 (50S ribosomal protein L1 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.208e-18
Identity = 61/171 (35.67%), Postives = 87/171 (50.88%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   I    +  K Y ++ A++LL+++S  KF+ET +A   L IDP+ +DQ +R   SLP GTGK V+VAV  QG   + AK A A+ VG +DL EQIK  +      +     +  +         + L PR     PK G V P      K  K  +V+YR +  G+
Sbjct:    5 SKRQKLINEKVDSTKAYSIEEAVALLQELSKVKFSETVDAAINLGIDPRKSDQAVRGATSLPHGTGKDVRVAVFTQGANAEAAKEAGAEFVGMEDLAEQIKGGMMDFDVVIADPAAMRVVG-----MLGQVLGPRGLMPNPKTGTVTPDVVGAVKNAKAGQVRYRADKGGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RALSO (50S ribosomal protein L1 OS=Ralstonia solanacearum GN=rplA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.208e-18
Identity = 65/174 (37.36%), Postives = 92/174 (52.87%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR    +   E  K Y +  A+SL+K+ +S KF E+ +   +L ID K +DQ +R +V LP GTGKSV+VAV AQGEK ++AK A A++VG +DL EQIK         I        + T+         + L PR     PK+G V P      K  K  +V++R +  G+
Sbjct:    5 SKRVAANKAKVERTKFYPIDEALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQAKAAGAEIVGMEDLAEQIKAGNMDFDVVIASPDTMRVVGTLG--------QILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROVU (50S ribosomal protein L1 OS=Proteus vulgaris GN=rplA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 6.208e-18
Identity = 57/171 (33.33%), Postives = 90/171 (52.63%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   E  K+Y++  A++LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV AQG   + AK A A+LVG DDL  ++K         +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRNIREKVEVTKQYEIAEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFAQGANAEAAKEAGAELVGMDDLAAKVKAGEMDFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ERWCT (50S ribosomal protein L1 OS=Erwinia carotovora subsp. atroseptica GN=rplA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.208e-18
Identity = 56/171 (32.75%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I++  +  K+YD+  A++LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK A A+ VG +DL +QIK+   G    +   + +  +         + L PR     PK+G V P         K  +V+YR + +G+
Sbjct:    5 TKRMRVIRDKVDVTKQYDINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAEFVGMEDLADQIKKGEMGFDVVIASPDAMRVVG-----QLGQLLGPRGLMPNPKVGTVTPNVAEAVNNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BURP8 (50S ribosomal protein L1 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.208e-18
Identity = 62/174 (35.63%), Postives = 94/174 (54.02%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR     +  + +K Y ++ A+SL+K+ +S KF E+ +   +L ID K +DQ +R +V LP GTGKSV+VAV AQGEK ++A+ A A++VG +DL EQ+K         I        + T+         + L PR     PK+G V P      K  K  +V++R +  G+
Sbjct:    5 SKRLQAFASKVDRQKLYAIEEALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEIVGMEDLAEQVKAGNLNFDVVIASPDTMRVVGTLG--------QILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BIFA0 (50S ribosomal protein L1 OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.208e-18
Identity = 60/166 (36.14%), Postives = 85/166 (51.20%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HG 995
            SK++ E     +    Y  + AI+LLK M +  F +T EA  RLN+DP+  DQ +R +V+LP GTGK+ KV V A+G K  EA  A AD+VG DDL+E++               + G +     + L PR     PK G V     +  K  K  KV +R + +G
Sbjct:    5 SKKYREAAERIDRNNLYTPEEAIALLKSMPAYNFDQTVEAVLRLNVDPRKADQLVRGSVNLPNGTGKTAKVLVFARGPKATEALEAGADIVGDDDLVEKVANGFLDFDSVVATPDMMG-KVGRLGRVLGPRGLMPNPKTGTVTMDVTKAIKDIKGGKVDFRVDKNG 169
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CHLSY (50S ribosomal protein L1 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.062e-18
Identity = 56/120 (46.67%), Postives = 68/120 (56.67%), Query Frame = 3 
Query:  450 PKKGKAALPL--KRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            PK GK  L    K DRTR                Y    A++L+K+ S TKF  T EAH RL IDP++ DQ +R TV+LP GTGK+V+V V AQGE    A +A AD  G DDLI +I R
Sbjct:    2 PKHGKKYLAALAKVDRTRL---------------YSPTEALALVKETSYTKFDGTVEAHLRLGIDPRHADQNIRTTVALPHGTGKTVRVLVFAQGEAVQAALDAGADYAGSDDLIARIDR 106

HSP 2 Score: 20.4014 bits (41), Expect = 7.062e-18
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 2 
Query:  890 GLLPNSKAGT 919
            GL+PN K+GT
Sbjct:  136 GLMPNPKSGT 145
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CHLAA (50S ribosomal protein L1 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.062e-18
Identity = 56/120 (46.67%), Postives = 68/120 (56.67%), Query Frame = 3 
Query:  450 PKKGKAALPL--KRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            PK GK  L    K DRTR                Y    A++L+K+ S TKF  T EAH RL IDP++ DQ +R TV+LP GTGK+V+V V AQGE    A +A AD  G DDLI +I R
Sbjct:    2 PKHGKKYLAALAKVDRTRL---------------YSPTEALALVKETSYTKFDGTVEAHLRLGIDPRHADQNIRTTVALPHGTGKTVRVLVFAQGEAVQAALDAGADYAGSDDLIARIDR 106

HSP 2 Score: 20.4014 bits (41), Expect = 7.062e-18
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 2 
Query:  890 GLLPNSKAGT 919
            GL+PN K+GT
Sbjct:  136 GLMPNPKSGT 145
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_LACDB (50S ribosomal protein L1 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rplA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.067e-18
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K+++E     +  K Y ++ AI L+K+ S   F  + E  + L++DPK  DQQ+R ++ LP GTGKSVKV V A+G + + AK A AD VG DDL+E+++
Sbjct:    6 KKYVEAAKKVDSNKLYSVEDAIKLVKETSYANFDASVEVSYNLSVDPKQADQQIRGSIVLPNGTGKSVKVIVFAEGPQAEAAKAAGADEVGADDLVEKVQ 105

HSP 2 Score: 22.7126 bits (47), Expect = 7.067e-18
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K GT T +  +A
Sbjct:  128 GRVLGPKGLMPNPKTGTVTMDTAKA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_LACDA (50S ribosomal protein L1 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rplA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.067e-18
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K+++E     +  K Y ++ AI L+K+ S   F  + E  + L++DPK  DQQ+R ++ LP GTGKSVKV V A+G + + AK A AD VG DDL+E+++
Sbjct:    6 KKYVEAAKKVDSNKLYSVEDAIKLVKETSYANFDASVEVSYNLSVDPKQADQQIRGSIVLPNGTGKSVKVIVFAEGPQAEAAKAAGADEVGADDLVEKVQ 105

HSP 2 Score: 22.7126 bits (47), Expect = 7.067e-18
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K GT T +  +A
Sbjct:  128 GRVLGPKGLMPNPKTGTVTMDTAKA 152
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SACD26.208e-1835.6750S ribosomal protein L1 OS=Saccharophagus degrada... [more]
RL1_RALSO6.208e-1837.3650S ribosomal protein L1 OS=Ralstonia solanacearum... [more]
RL1_PROVU6.208e-1833.3350S ribosomal protein L1 OS=Proteus vulgaris GN=rp... [more]
RL1_ERWCT6.208e-1832.7550S ribosomal protein L1 OS=Erwinia carotovora sub... [more]
RL1_BURP86.208e-1835.6350S ribosomal protein L1 OS=Burkholderia phymatum ... [more]
RL1_BIFA06.208e-1836.1450S ribosomal protein L1 OS=Bifidobacterium animal... [more]
RL1_CHLSY7.062e-1846.6750S ribosomal protein L1 OS=Chloroflexus aurantiac... [more]
RL1_CHLAA7.062e-1846.6750S ribosomal protein L1 OS=Chloroflexus aurantiac... [more]
RL1_LACDB7.067e-1843.0050S ribosomal protein L1 OS=Lactobacillus delbruec... [more]
RL1_LACDA7.067e-1843.0050S ribosomal protein L1 OS=Lactobacillus delbruec... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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