DY257117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_AGRT5 (50S ribosomal protein L1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplA PE=3 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 7.067e-18 Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 3 Query: 516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 IQ +REG K Y L AIS++K+ + KF ET E L +DP++ DQ +R V+LP GTG+ V+VAV A+G K DEA A AD+VG ++L+E ++ Sbjct: 8 IQKIREGVDPNKLYVLTDAISMVKERAVAKFDETVEVSMNLGVDPRHADQMVRGVVNLPNGTGRDVRVAVFARGVKADEATAAGADVVGAEELVEIVQ 105 HSP 2 Score: 22.7126 bits (47), Expect = 7.067e-18 Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 GK+ G++PN K GT T ++ A Sbjct: 128 GKVLGPRGMMPNPKVGTVTMDVAGA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_XANP2 (50S ribosomal protein L1 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.067e-18 Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 3 Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 + KR + + K Y L A++LLK+ ++ KF ET E L +DP++ DQ +R +LP G+G++V+VAV A+G K DEAK A AD+VG +DL+E I+ Sbjct: 4 QGKRIRAVNEGIDRVKLYPLDEALALLKERTTAKFDETIEVALNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADEAKAAGADIVGAEDLLETIQ 105 HSP 2 Score: 23.483 bits (49), Expect = 7.067e-18 Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 GK+ GL+PN K GT T ++ A Sbjct: 128 GKVLGPRGLMPNPKVGTVTMDVKGA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THETN (50S ribosomal protein L1 OS=Thermoanaerobacter tengcongensis GN=rplA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18 Identity = 59/170 (34.71%), Postives = 90/170 (52.94%), Query Frame = 3 Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR--------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 R KR+LE L + ++Y A+ ++ + ++ KF ET + RL +DP++ DQQ+R TV LP GTGK+VKV V A+GEK EA+ A AD VG ++L+E+I++ I + + K L P+ PK G V + K+ K K++YR Sbjct: 3 RGKRYLENLKLYDKTQQYSSDEAMDIVLKTANAKFDETIDLAVRLGVDPRHADQQVRGTVILPHGTGKTVKVLVFAKGEKAKEAEAAGADYVGAEELVEKIQKENWFDYDVVIATPDMMGVVGRLG--------KLLGPKGLMPNPKSGTVTFEVEKAVKEAKAGKIEYR 164
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RALME (50S ribosomal protein L1 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18 Identity = 65/174 (37.36%), Postives = 91/174 (52.30%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR + E K Y + A+SL+K +S KF E+ + +L ID K +DQ +R +V LP GTGKSV+VAV AQGEK + AK A AD+VG +DL EQ+K I + T+ + L PR PK+G V P + K K +V++R + G+ Sbjct: 5 SKRVAANKAKIERTKFYPIDEALSLVKSCASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEAAKAAGADVVGMEDLAEQVKAGNLDFDIVIASPDTMRIVGTLG--------QILGPRGLMPNPKVGTVTPDVAQAVKNAKAGQVQFRVDKAGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_NEIM0 (50S ribosomal protein L1 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rplA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18 Identity = 60/168 (35.71%), Postives = 91/168 (54.17%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR +++ E K Y + AI+L+K+ ++ KF E+ + F L +DP+ +DQ +R +V LPKGTGK+ +VAV QG + AK A AD+VG +DL +IK L + + + R + L PR PK+G V P K K +V+YR + G+ Sbjct: 5 SKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDVSFNLGVDPRKSDQVIRGSVVLPKGTGKTTRVAVFTQGANAEAAKEAGADIVGFEDLAAEIK--AGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVQYRTDKAGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_MESSB (50S ribosomal protein L1 OS=Mesorhizobium sp. (strain BNC1) GN=rplA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18 Identity = 58/162 (35.80%), Postives = 90/162 (55.56%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 SKR + + + + Y L A+ ++K+ ++ KF ET E L +DP++ DQ +R V+LP GTG+SV+VAV A+G+K DEAK A AD+VG +DL+E +++ + C+ T + + K L PR PK+G V K K V++R Sbjct: 5 SKRVAKGREGIDRNRFYPLDEAVKVIKERATAKFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFAKGDKADEAKAAGADIVGAEDLVETVQK--GEINFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTTDVAAAVKASKGGAVEFR 164
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_GEOUR (50S ribosomal protein L1 OS=Geobacter uraniireducens (strain Rf4) GN=rplA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18 Identity = 61/161 (37.89%), Postives = 82/161 (50.93%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 SK+ E + K Y LK I L+K + KFTET + RL +DP++ DQ +R V LP G GK V+V V A+GEK EA++A AD VG DDL+ +I+ A + G K L PR PK+G V R + K KV++R Sbjct: 4 SKKLKEALAKVDRSKSYTLKDGIELVKNTAFAKFTETVDVAVRLGVDPRHADQMVRGAVVLPNGLGKDVRVLVFAKGEKEKEARDAGADFVGADDLVAKIQEGWFDFDTAIATPDMMG-VVGKIGKLLGPRGLMPNPKVGTVTFDVGRAVNESKSGKVEFR 163
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_FINM2 (50S ribosomal protein L1 OS=Finegoldia magna (strain ATCC 29328) GN=rplA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18 Identity = 62/163 (38.04%), Postives = 85/163 (52.15%), Query Frame = 3 Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQI-KRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 + K++ E L + EY L A L+ + + KF E+ E H +L +D ++ DQQ+R T+ LP GTGK KVAV A+GEK +EAK A AD VG +DL E+I K G A + G + L P+ PK G V K+ K KV+YR Sbjct: 4 KGKKYQESAKLIDRTVEYKLDEASKLVVETAKAKFDESVELHAKLGVDSRHADQQVRGTIVLPHGTGKDQKVAVFAKGEKAEEAKAAGADFVGAEDLAEKIQKEGWLGFDVAVATPDMMG-VVGRIGRILGPQGLMPNPKAGTVTMDVTSAIKEIKAGKVEYR 165
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BORPD (50S ribosomal protein L1 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rplA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18 Identity = 62/171 (36.26%), Postives = 92/171 (53.80%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR I + K Y + A++L+K+ ++ KF E+ + +L IDPK +DQ +R +V LP GTGKSV+VAV AQG+K + A+ A AD+VG DDL E+IK + + + + + L PR PK+G V P K K +V+YR + G+ Sbjct: 5 SKRAAAIAKKIDRTKLYPVSEALTLVKETATAKFDESIDVAVQLGIDPKKSDQLVRGSVVLPAGTGKSVRVAVFAQGDKAEAARAAGADIVGLDDLAERIKGGQIDFDVVIASPDTMRVVGA-----LGQVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKAGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ACIF5 (50S ribosomal protein L1 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplA PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 9.193e-18 Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 3 Query: 492 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 T+SKR L I+ + + Y ++ A+ L+K+M++TKF E+ + L IDP+ +DQ +R V LP GTGK ++VAV A +K EA+ A AD+VG +DL E +K Sbjct: 3 TKSKRTLAIRAMVDRNNRYAIEEALELVKKMATTKFDESVDVAVGLGIDPRKSDQVVRGAVVLPHGTGKQMRVAVFATADKATEAREAGADIVGMEDLAELVK 105 HSP 2 Score: 22.7126 bits (47), Expect = 9.193e-18 Identity = 11/27 (40.74%), Postives = 15/27 (55.56%), Query Frame = 2 Query: 863 TQGKIP*TTGLLPNSKAGTGTTNLPQA 943 T G + GL+PN K GT T ++ A Sbjct: 126 TLGPVLGPRGLMPNPKVGTVTADVRTA 152 The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bpback to top |