DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_AGRT5 (50S ribosomal protein L1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplA PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 7.067e-18
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            IQ +REG    K Y L  AIS++K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG+ V+VAV A+G K DEA  A AD+VG ++L+E ++
Sbjct:    8 IQKIREGVDPNKLYVLTDAISMVKERAVAKFDETVEVSMNLGVDPRHADQMVRGVVNLPNGTGRDVRVAVFARGVKADEATAAGADVVGAEELVEIVQ 105          

HSP 2 Score: 22.7126 bits (47), Expect = 7.067e-18
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    G++PN K GT T ++  A
Sbjct:  128 GKVLGPRGMMPNPKVGTVTMDVAGA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_XANP2 (50S ribosomal protein L1 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.067e-18
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            + KR   +    +  K Y L  A++LLK+ ++ KF ET E    L +DP++ DQ +R   +LP G+G++V+VAV A+G K DEAK A AD+VG +DL+E I+
Sbjct:    4 QGKRIRAVNEGIDRVKLYPLDEALALLKERTTAKFDETIEVALNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADEAKAAGADIVGAEDLLETIQ 105          

HSP 2 Score: 23.483 bits (49), Expect = 7.067e-18
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    GL+PN K GT T ++  A
Sbjct:  128 GKVLGPRGLMPNPKVGTVTMDVKGA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THETN (50S ribosomal protein L1 OS=Thermoanaerobacter tengcongensis GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18
Identity = 59/170 (34.71%), Postives = 90/170 (52.94%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR--------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            R KR+LE   L +  ++Y    A+ ++ + ++ KF ET +   RL +DP++ DQQ+R TV LP GTGK+VKV V A+GEK  EA+ A AD VG ++L+E+I++         I        +  +         K L P+     PK G V     +  K+ K  K++YR
Sbjct:    3 RGKRYLENLKLYDKTQQYSSDEAMDIVLKTANAKFDETIDLAVRLGVDPRHADQQVRGTVILPHGTGKTVKVLVFAKGEKAKEAEAAGADYVGAEELVEKIQKENWFDYDVVIATPDMMGVVGRLG--------KLLGPKGLMPNPKSGTVTFEVEKAVKEAKAGKIEYR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RALME (50S ribosomal protein L1 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18
Identity = 65/174 (37.36%), Postives = 91/174 (52.30%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR    +   E  K Y +  A+SL+K  +S KF E+ +   +L ID K +DQ +R +V LP GTGKSV+VAV AQGEK + AK A AD+VG +DL EQ+K         I        + T+         + L PR     PK+G V P   +  K  K  +V++R +  G+
Sbjct:    5 SKRVAANKAKIERTKFYPIDEALSLVKSCASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEAAKAAGADVVGMEDLAEQVKAGNLDFDIVIASPDTMRIVGTLG--------QILGPRGLMPNPKVGTVTPDVAQAVKNAKAGQVQFRVDKAGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_NEIM0 (50S ribosomal protein L1 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18
Identity = 60/168 (35.71%), Postives = 91/168 (54.17%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   +++  E  K Y +  AI+L+K+ ++ KF E+ +  F L +DP+ +DQ +R +V LPKGTGK+ +VAV  QG   + AK A AD+VG +DL  +IK     L     + + +  R   +    L PR     PK+G V P      K  K  +V+YR +  G+
Sbjct:    5 SKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDVSFNLGVDPRKSDQVIRGSVVLPKGTGKTTRVAVFTQGANAEAAKEAGADIVGFEDLAAEIK--AGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVQYRTDKAGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_MESSB (50S ribosomal protein L1 OS=Mesorhizobium sp. (strain BNC1) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18
Identity = 58/162 (35.80%), Postives = 90/162 (55.56%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            SKR  + +   +  + Y L  A+ ++K+ ++ KF ET E    L +DP++ DQ +R  V+LP GTG+SV+VAV A+G+K DEAK A AD+VG +DL+E +++    +    C+ T +      +  K L PR     PK+G V        K  K   V++R
Sbjct:    5 SKRVAKGREGIDRNRFYPLDEAVKVIKERATAKFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFAKGDKADEAKAAGADIVGAEDLVETVQK--GEINFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTTDVAAAVKASKGGAVEFR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_GEOUR (50S ribosomal protein L1 OS=Geobacter uraniireducens (strain Rf4) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18
Identity = 61/161 (37.89%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            SK+  E     +  K Y LK  I L+K  +  KFTET +   RL +DP++ DQ +R  V LP G GK V+V V A+GEK  EA++A AD VG DDL+ +I+        A     + G       K L PR     PK+G V     R   + K  KV++R
Sbjct:    4 SKKLKEALAKVDRSKSYTLKDGIELVKNTAFAKFTETVDVAVRLGVDPRHADQMVRGAVVLPNGLGKDVRVLVFAKGEKEKEARDAGADFVGADDLVAKIQEGWFDFDTAIATPDMMG-VVGKIGKLLGPRGLMPNPKVGTVTFDVGRAVNESKSGKVEFR 163          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_FINM2 (50S ribosomal protein L1 OS=Finegoldia magna (strain ATCC 29328) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18
Identity = 62/163 (38.04%), Postives = 85/163 (52.15%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQI-KRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            + K++ E   L +   EY L  A  L+ + +  KF E+ E H +L +D ++ DQQ+R T+ LP GTGK  KVAV A+GEK +EAK A AD VG +DL E+I K    G   A     + G       + L P+     PK G V        K+ K  KV+YR
Sbjct:    4 KGKKYQESAKLIDRTVEYKLDEASKLVVETAKAKFDESVELHAKLGVDSRHADQQVRGTIVLPHGTGKDQKVAVFAKGEKAEEAKAAGADFVGAEDLAEKIQKEGWLGFDVAVATPDMMG-VVGRIGRILGPQGLMPNPKAGTVTMDVTSAIKEIKAGKVEYR 165          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BORPD (50S ribosomal protein L1 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.108e-18
Identity = 62/171 (36.26%), Postives = 92/171 (53.80%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   I    +  K Y +  A++L+K+ ++ KF E+ +   +L IDPK +DQ +R +V LP GTGKSV+VAV AQG+K + A+ A AD+VG DDL E+IK         +   + +  +         + L PR     PK+G V P      K  K  +V+YR +  G+
Sbjct:    5 SKRAAAIAKKIDRTKLYPVSEALTLVKETATAKFDESIDVAVQLGIDPKKSDQLVRGSVVLPAGTGKSVRVAVFAQGDKAEAARAAGADIVGLDDLAERIKGGQIDFDVVIASPDTMRVVGA-----LGQVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKAGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ACIF5 (50S ribosomal protein L1 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.193e-18
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 3
Query:  492 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            T+SKR L I+ + +    Y ++ A+ L+K+M++TKF E+ +    L IDP+ +DQ +R  V LP GTGK ++VAV A  +K  EA+ A AD+VG +DL E +K
Sbjct:    3 TKSKRTLAIRAMVDRNNRYAIEEALELVKKMATTKFDESVDVAVGLGIDPRKSDQVVRGAVVLPHGTGKQMRVAVFATADKATEAREAGADIVGMEDLAELVK 105          

HSP 2 Score: 22.7126 bits (47), Expect = 9.193e-18
Identity = 11/27 (40.74%), Postives = 15/27 (55.56%), Query Frame = 2
Query:  863 TQGKIP*TTGLLPNSKAGTGTTNLPQA 943
            T G +    GL+PN K GT T ++  A
Sbjct:  126 TLGPVLGPRGLMPNPKVGTVTADVRTA 152          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_AGRT57.067e-1846.9450S ribosomal protein L1 OS=Agrobacterium tumefaci... [more]
RL1_XANP27.067e-1843.1450S ribosomal protein L1 OS=Xanthobacter autotroph... [more]
RL1_THETN8.108e-1834.7150S ribosomal protein L1 OS=Thermoanaerobacter ten... [more]
RL1_RALME8.108e-1837.3650S ribosomal protein L1 OS=Ralstonia metalliduran... [more]
RL1_NEIM08.108e-1835.7150S ribosomal protein L1 OS=Neisseria meningitidis... [more]
RL1_MESSB8.108e-1835.8050S ribosomal protein L1 OS=Mesorhizobium sp. (str... [more]
RL1_GEOUR8.108e-1837.8950S ribosomal protein L1 OS=Geobacter uraniireduce... [more]
RL1_FINM28.108e-1838.0450S ribosomal protein L1 OS=Finegoldia magna (stra... [more]
RL1_BORPD8.108e-1836.2650S ribosomal protein L1 OS=Bordetella petrii (str... [more]
RL1_ACIF59.193e-1843.6950S ribosomal protein L1 OS=Acidithiobacillus ferr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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