DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ACIF2 (50S ribosomal protein L1 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.193e-18
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 3
Query:  492 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            T+SKR L I+ + +    Y ++ A+ L+K+M++TKF E+ +    L IDP+ +DQ +R  V LP GTGK ++VAV A  +K  EA+ A AD+VG +DL E +K
Sbjct:    3 TKSKRTLAIRAMVDRNNRYAIEEALELVKKMATTKFDESVDVAVGLGIDPRKSDQVVRGAVVLPHGTGKQMRVAVFATADKATEAREAGADIVGMEDLAELVK 105          

HSP 2 Score: 22.7126 bits (47), Expect = 9.193e-18
Identity = 11/27 (40.74%), Postives = 15/27 (55.56%), Query Frame = 2
Query:  863 TQGKIP*TTGLLPNSKAGTGTTNLPQA 943
            T G +    GL+PN K GT T ++  A
Sbjct:  126 TLGPVLGPRGLMPNPKVGTVTADVRTA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THET8 (50S ribosomal protein L1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplA PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.059e-17
Identity = 54/162 (33.33%), Postives = 84/162 (51.85%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN 986
            KR+  +    +  K Y +  A  L+K++++ KF ET E H +L IDP+ +DQ +R TVSLP G GK V+V   A+GEK  EA+ A AD VGG+++I++I               + G       + L PR     PK G V        ++ K  ++++R +
Sbjct:    6 KRYRALLEKVDPNKVYTIDEAARLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRND 167          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHEPA (50S ribosomal protein L1 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.059e-17
Identity = 57/171 (33.33%), Postives = 87/171 (50.88%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   E  K YD+  A++LLK++++ KF E+ +    L +DP+ +DQ +R    LP GTG+ V+VAV  QG   + AK A A+LVG D+L  QIK         +   + +  +         + L PR     PK G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRARLIREKVEATKSYDINEAVALLKELATAKFLESVDVAVNLGVDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAAKEAGAELVGMDELAAQIKAGEMNFDVVIASPDAMRVVG-----MLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHEHH (50S ribosomal protein L1 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.059e-17
Identity = 57/171 (33.33%), Postives = 87/171 (50.88%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   E  K YD+  A++LLK++++ KF E+ +    L +DP+ +DQ +R    LP GTG+ V+VAV  QG   + AK A A+LVG D+L  QIK         +   + +  +         + L PR     PK G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRARLIREKVEATKSYDINEAVALLKELATAKFLESVDVAVNLGVDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAAKEAGAELVGMDELAAQIKAGEMNFDVVIASPDAMRVVG-----MLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_LACJO (50S ribosomal protein L1 OS=Lactobacillus johnsonii GN=rplA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.059e-17
Identity = 58/166 (34.94%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            KR+LE     +  K Y +  A+ L K+ S   F  T E  + LN+DPK  DQQ+R  + LP GTGKS KV V A+G + D+AK A AD VG DDL+E+++              +   +     + L P+     PK G V     +  +  K  +V+YR +  GL
Sbjct:    6 KRYLEAAKKVDSTKFYSVDEAMKLAKETSYANFDATIEVAYNLNVDPKQADQQIRGALVLPNGTGKSKKVVVFAEGPQADQAKEAGADEVGSDDLVEKVQNGYLDFDVVIATPMMMA-KVGRLGRILGPKGLMPNPKTGTVTMDVAKAVENQKAGQVEYRVDKQGL 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ALHEH (50S ribosomal protein L1 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.059e-17
Identity = 61/169 (36.09%), Postives = 88/169 (52.07%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING--*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  ++Y +  A+ LL+++   KFTE+ E    L +DP+ +DQ +R +  LP GTGK+V+VAV AQG+  + AK A AD+VG DDL EQ+K                G   R  P    L PR     PK+G V P      K  K  +V+YR +  G+
Sbjct:    5 TKRQKAIREKIDPAQQYPVAEALGLLRELPGAKFTESVEVAVNLGVDPRKSDQIVRGSTVLPNGTGKTVRVAVFAQGDAAEAAKEAGADIVGMDDLAEQVKGGNLDFDVVVAAPDAMGVVGRLGP---ILGPRGLMPNPKVGTVTPDVAGAVKNAKAGQVRYRTDKGGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_CYACA (50S ribosomal protein L1, chloroplastic OS=Cyanidium caldarium GN=rpl1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.059e-17
Identity = 64/171 (37.43%), Postives = 92/171 (53.80%), Query Frame = 3
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            + RS+RF  +Q+    +K  +   AI+LLK     KF+ET E H  L+++ KY+DQQLRA+V LPKGTGK  K+AV     + ++ KN   D+VG  DL+E I      L+    L T +      K  K L PR     PK G V        ++FK+ K++YR +  G+
Sbjct:    3 KIRSRRFKILQSQISVEKMCEPIEAINLLKSGPKAKFSETFEVHCCLDLNTKYSDQQLRASVVLPKGTGKRTKIAVITNEAEVNKIKNFGVDIVGSKDLVESIANGF--LEFDQLLTTPDMMPVIAKVGKILGPRGLMPSPKSGSVTSDIYNAIQEFKKGKLEYRTDKSGI 171          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOBB (50S ribosomal protein L1 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rplA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.195e-17
Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K+++E   L +    Y+   A+ L  + +   F ET E H RL +DP++ DQQ+R  V LP GTGK+V+V V A+G+K  EA+ A AD VG +DL+++I+
Sbjct:    3 KKYIESSKLIDKSALYNSTEALDLTVKTAKANFDETIELHVRLGVDPRHADQQVRGAVVLPNGTGKTVRVLVFAKGDKATEAQEAGADFVGAEDLVQKIQ 102          

HSP 2 Score: 23.483 bits (49), Expect = 1.195e-17
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++ +A
Sbjct:  126 GRVLGPKGLMPNPKSGTVTFDVAKA 150          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOBA (50S ribosomal protein L1 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rplA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.195e-17
Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K+++E   L +    Y+   A+ L  + +   F ET E H RL +DP++ DQQ+R  V LP GTGK+V+V V A+G+K  EA+ A AD VG +DL+++I+
Sbjct:    3 KKYIESSKLIDKSALYNSTEALDLTVKTAKANFDETIELHVRLGVDPRHADQQVRGAVVLPNGTGKTVRVLVFAKGDKATEAQEAGADFVGAEDLVQKIQ 102          

HSP 2 Score: 23.483 bits (49), Expect = 1.195e-17
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++ +A
Sbjct:  126 GRVLGPKGLMPNPKSGTVTFDVAKA 150          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ENTFA (50S ribosomal protein L1 OS=Enterococcus faecalis GN=rplA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.195e-17
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            +SK+  E     +  K Y ++ A++L K  +  KF  T E  ++LN+DPK  DQQ+R  V LP GTGK+  V V A+GEK  EA+ A AD VG DD++ +I+
Sbjct:    4 KSKKMQEALKKVDATKAYSVEEAVALAKDTNIAKFDATVEVAYKLNVDPKKADQQIRGAVVLPNGTGKTQTVLVFAKGEKAKEAEAAGADFVGDDDMVAKIQ 105          

HSP 2 Score: 23.8682 bits (50), Expect = 1.195e-17
Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 2
Query:  854 TLPTQGKIP*TTGLLPNSKAGTGTTNLPQA 943
            T+   G++    GL+PN K GT T ++ +A
Sbjct:  123 TVGKLGRVLGPKGLMPNPKTGTVTMDVTKA 152          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_ACIF29.193e-1843.6950S ribosomal protein L1 OS=Acidithiobacillus ferr... [more]
RL1_THET81.059e-1733.3350S ribosomal protein L1 OS=Thermus thermophilus (... [more]
RL1_SHEPA1.059e-1733.3350S ribosomal protein L1 OS=Shewanella pealeana (s... [more]
RL1_SHEHH1.059e-1733.3350S ribosomal protein L1 OS=Shewanella halifaxensi... [more]
RL1_LACJO1.059e-1734.9450S ribosomal protein L1 OS=Lactobacillus johnsoni... [more]
RL1_ALHEH1.059e-1736.0950S ribosomal protein L1 OS=Alkalilimnicola ehrlic... [more]
RK1_CYACA1.059e-1737.4350S ribosomal protein L1, chloroplastic OS=Cyanidi... [more]
RL1_CLOBB1.195e-1742.0050S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOBA1.195e-1742.0050S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_ENTFA1.195e-1743.1450S ribosomal protein L1 OS=Enterococcus faecalis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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