DY257117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ACIF2 (50S ribosomal protein L1 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplA PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 9.193e-18 Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 3 Query: 492 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 T+SKR L I+ + + Y ++ A+ L+K+M++TKF E+ + L IDP+ +DQ +R V LP GTGK ++VAV A +K EA+ A AD+VG +DL E +K Sbjct: 3 TKSKRTLAIRAMVDRNNRYAIEEALELVKKMATTKFDESVDVAVGLGIDPRKSDQVVRGAVVLPHGTGKQMRVAVFATADKATEAREAGADIVGMEDLAELVK 105 HSP 2 Score: 22.7126 bits (47), Expect = 9.193e-18 Identity = 11/27 (40.74%), Postives = 15/27 (55.56%), Query Frame = 2 Query: 863 TQGKIP*TTGLLPNSKAGTGTTNLPQA 943 T G + GL+PN K GT T ++ A Sbjct: 126 TLGPVLGPRGLMPNPKVGTVTADVRTA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THET8 (50S ribosomal protein L1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplA PE=1 SV=3) HSP 1 Score: 91.6633 bits (226), Expect = 1.059e-17 Identity = 54/162 (33.33%), Postives = 84/162 (51.85%), Query Frame = 3 Query: 501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN 986 KR+ + + K Y + A L+K++++ KF ET E H +L IDP+ +DQ +R TVSLP G GK V+V A+GEK EA+ A AD VGG+++I++I + G + L PR PK G V ++ K ++++R + Sbjct: 6 KRYRALLEKVDPNKVYTIDEAARLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRND 167
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHEPA (50S ribosomal protein L1 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rplA PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.059e-17 Identity = 57/171 (33.33%), Postives = 87/171 (50.88%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 +KR I+ E K YD+ A++LLK++++ KF E+ + L +DP+ +DQ +R LP GTG+ V+VAV QG + AK A A+LVG D+L QIK + + + + + L PR PK G V P K K +V+YR + +G+ Sbjct: 5 TKRARLIREKVEATKSYDINEAVALLKELATAKFLESVDVAVNLGVDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAAKEAGAELVGMDELAAQIKAGEMNFDVVIASPDAMRVVG-----MLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHEHH (50S ribosomal protein L1 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplA PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.059e-17 Identity = 57/171 (33.33%), Postives = 87/171 (50.88%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 +KR I+ E K YD+ A++LLK++++ KF E+ + L +DP+ +DQ +R LP GTG+ V+VAV QG + AK A A+LVG D+L QIK + + + + + L PR PK G V P K K +V+YR + +G+ Sbjct: 5 TKRARLIREKVEATKSYDINEAVALLKELATAKFLESVDVAVNLGVDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAAKEAGAELVGMDELAAQIKAGEMNFDVVIASPDAMRVVG-----MLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_LACJO (50S ribosomal protein L1 OS=Lactobacillus johnsonii GN=rplA PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.059e-17 Identity = 58/166 (34.94%), Postives = 83/166 (50.00%), Query Frame = 3 Query: 501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 KR+LE + K Y + A+ L K+ S F T E + LN+DPK DQQ+R + LP GTGKS KV V A+G + D+AK A AD VG DDL+E+++ + + + L P+ PK G V + + K +V+YR + GL Sbjct: 6 KRYLEAAKKVDSTKFYSVDEAMKLAKETSYANFDATIEVAYNLNVDPKQADQQIRGALVLPNGTGKSKKVVVFAEGPQADQAKEAGADEVGSDDLVEKVQNGYLDFDVVIATPMMMA-KVGRLGRILGPKGLMPNPKTGTVTMDVAKAVENQKAGQVEYRVDKQGL 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ALHEH (50S ribosomal protein L1 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rplA PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.059e-17 Identity = 61/169 (36.09%), Postives = 88/169 (52.07%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING--*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 +KR I+ + ++Y + A+ LL+++ KFTE+ E L +DP+ +DQ +R + LP GTGK+V+VAV AQG+ + AK A AD+VG DDL EQ+K G R P L PR PK+G V P K K +V+YR + G+ Sbjct: 5 TKRQKAIREKIDPAQQYPVAEALGLLRELPGAKFTESVEVAVNLGVDPRKSDQIVRGSTVLPNGTGKTVRVAVFAQGDAAEAAKEAGADIVGMDDLAEQVKGGNLDFDVVVAAPDAMGVVGRLGP---ILGPRGLMPNPKVGTVTPDVAGAVKNAKAGQVRYRTDKGGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_CYACA (50S ribosomal protein L1, chloroplastic OS=Cyanidium caldarium GN=rpl1 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.059e-17 Identity = 64/171 (37.43%), Postives = 92/171 (53.80%), Query Frame = 3 Query: 489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 + RS+RF +Q+ +K + AI+LLK KF+ET E H L+++ KY+DQQLRA+V LPKGTGK K+AV + ++ KN D+VG DL+E I L+ L T + K K L PR PK G V ++FK+ K++YR + G+ Sbjct: 3 KIRSRRFKILQSQISVEKMCEPIEAINLLKSGPKAKFSETFEVHCCLDLNTKYSDQQLRASVVLPKGTGKRTKIAVITNEAEVNKIKNFGVDIVGSKDLVESIANGF--LEFDQLLTTPDMMPVIAKVGKILGPRGLMPSPKSGSVTSDIYNAIQEFKKGKLEYRTDKSGI 171
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOBB (50S ribosomal protein L1 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rplA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.195e-17 Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 3 Query: 501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 K+++E L + Y+ A+ L + + F ET E H RL +DP++ DQQ+R V LP GTGK+V+V V A+G+K EA+ A AD VG +DL+++I+ Sbjct: 3 KKYIESSKLIDKSALYNSTEALDLTVKTAKANFDETIELHVRLGVDPRHADQQVRGAVVLPNGTGKTVRVLVFAKGDKATEAQEAGADFVGAEDLVQKIQ 102 HSP 2 Score: 23.483 bits (49), Expect = 1.195e-17 Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 G++ GL+PN K+GT T ++ +A Sbjct: 126 GRVLGPKGLMPNPKSGTVTFDVAKA 150
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOBA (50S ribosomal protein L1 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rplA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.195e-17 Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 3 Query: 501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 K+++E L + Y+ A+ L + + F ET E H RL +DP++ DQQ+R V LP GTGK+V+V V A+G+K EA+ A AD VG +DL+++I+ Sbjct: 3 KKYIESSKLIDKSALYNSTEALDLTVKTAKANFDETIELHVRLGVDPRHADQQVRGAVVLPNGTGKTVRVLVFAKGDKATEAQEAGADFVGAEDLVQKIQ 102 HSP 2 Score: 23.483 bits (49), Expect = 1.195e-17 Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 G++ GL+PN K+GT T ++ +A Sbjct: 126 GRVLGPKGLMPNPKSGTVTFDVAKA 150
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ENTFA (50S ribosomal protein L1 OS=Enterococcus faecalis GN=rplA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.195e-17 Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 3 Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 +SK+ E + K Y ++ A++L K + KF T E ++LN+DPK DQQ+R V LP GTGK+ V V A+GEK EA+ A AD VG DD++ +I+ Sbjct: 4 KSKKMQEALKKVDATKAYSVEEAVALAKDTNIAKFDATVEVAYKLNVDPKKADQQIRGAVVLPNGTGKTQTVLVFAKGEKAKEAEAAGADFVGDDDMVAKIQ 105 HSP 2 Score: 23.8682 bits (50), Expect = 1.195e-17 Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 2 Query: 854 TLPTQGKIP*TTGLLPNSKAGTGTTNLPQA 943 T+ G++ GL+PN K GT T ++ +A Sbjct: 123 TVGKLGRVLGPKGLMPNPKTGTVTMDVTKA 152 The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bpback to top |