DY257117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CAMLR (50S ribosomal protein L1 OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=rplA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.131e-23 Identity = 51/102 (50.00%), Postives = 71/102 (69.61%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803 +KRF E+ + K Y + AIS +K ++S KF ET E +LN+DP++ DQ +R +V LP GTGK V+VAV A+ K DEAKNA AD+VG DDL+E+I++ Sbjct: 5 TKRFTELLKKIDSNKNYLMDEAISTVKTLASAKFDETVEIALKLNVDPRHADQMVRGSVVLPCGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEIQK 106 HSP 2 Score: 25.409 bits (54), Expect = 5.131e-23 Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 G+I GL+PN K GT T ++ QA Sbjct: 128 GRILGPKGLMPNPKTGTVTMDVAQA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_GUITH (50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.093e-22 Identity = 67/167 (40.12%), Postives = 93/167 (55.69%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR E++N E K Y A++LLK ++ KF E+AEAH L +D KY DQQLR T+ LPKGTGK +++AV A+GEK EA NA ADL G DL++ I + + + + K L PR PK G V ++FK+ K++YR + G+ Sbjct: 5 SKRISEVRNKIENKP-YKAIEALNLLKDTATAKFVESAEAHIALKLDTKYADQQLRTTLVLPKGTGKKIRIAVIAEGEKATEAINAGADLAGSTDLVQDIMKGMLDFDRLIATPDMMP-LIAKLGKVLGPRGLMPSPKSGTVTSDVKSAIEEFKKGKLEYRADKSGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROMM (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.435e-22 Identity = 68/155 (43.87%), Postives = 89/155 (57.42%), Query Frame = 3 Query: 546 YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 Y AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP+GTG+SV++AV ++GEK EAK A A+L G DDL+E I G Q + I PK + L PR PK G V K+FK K+++R + G+ Sbjct: 20 YQPLEAIQLVKENATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPQGTGQSVRIAVISRGEKLAEAKTAGAELAGDDDLVESI-----GKGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRADRAGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ACAM1 (50S ribosomal protein L1 OS=Acaryochloris marina (strain MBIC 11017) GN=rplA PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 3.181e-22 Identity = 69/170 (40.59%), Postives = 100/170 (58.82%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEK---FLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 S+R E++ E + Y+ A+ LL + ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG+ V++AV A+GEK EA +A AD+VG ++LI +I++ G + L P K L PR PK G V P+ ++FK K+++R + G+ Sbjct: 6 SRRMRELKQQVEDRA-YEPLEALELLCKTATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQEVRIAVVARGEKVKEATDAGADVVGSEELITEIQQ---GRMDFDLLIATPD-MMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIEEFKAGKLEFRADRTGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HELHP (50S ribosomal protein L1 OS=Helicobacter hepaticus GN=rplA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.239e-22 Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 +KR +Q E +K Y +++ +S +K ++S KF ET E RL +DP++ DQ +R V LP GTGK V+VAV A+G K DEAKNA AD+VG DDL E+IK Sbjct: 6 AKRLQTLQAKVEPQKVYSIQSGVSAVKSLASAKFDETVEVALRLGVDPRHADQMIRGAVVLPHGTGKKVRVAVFAKGIKADEAKNAGADVVGADDLAEEIK 106 HSP 2 Score: 23.8682 bits (50), Expect = 3.239e-22 Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 G+I GL+PN K GT T ++ +A Sbjct: 129 GRILGPKGLMPNPKTGTVTIDVAKA 153
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROM4 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplA PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 4.154e-22 Identity = 65/167 (38.92%), Postives = 95/167 (56.89%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR + + E + Y AI+L+K+ S+ KF ET EAH RL IDPKY DQQ+R TV+LP GTG+++++AV A+GEK EAK+A ADL G ++L++ I + G + + + L PR PK G V K+FK K+++R + G+ Sbjct: 5 SKRMASLSSKIEDRA-YPPLEAINLVKESSTAKFDETIEAHVRLGIDPKYTDQQIRTTVTLPNGTGQTIRIAVIARGEKVAEAKSAGADLAGEEELVDSISKGEMGFDLLIATPDMMP-KVAKLGRVLGPRGLMPNPKTGTVTADLVGAIKEFKAGKLEFRADKAGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROM3 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplA PE=3 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 4.154e-22 Identity = 67/150 (44.67%), Postives = 87/150 (58.00%), Query Frame = 3 Query: 561 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP+GTG+SV++AV +GEK EAK A A+L G DDL+E I G Q + I PK + L PR PK G V K+FK K+++R + G+ Sbjct: 25 AIQLVKENATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPQGTGQSVRIAVITRGEKLAEAKTAGAELAGDDDLVESI-----GKGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRADRAGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROMA (50S ribosomal protein L1 OS=Prochlorococcus marinus GN=rplA PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 5.426e-22 Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 3 Query: 540 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 K Y AI L+K+ ++ KF ET EAH RL IDPKY DQQ+R TVSLPKGTG+ V++AV A+GEK EA +A ADL G ++LI+ I + + N I+ PK + L PR PK G V K+FK K+++R + G+ Sbjct: 18 KSYAPLEAIQLVKENANAKFDETIEAHIRLGIDPKYTDQQIRTTVSLPKGTGQKVRIAVIAKGEKVAEANSAGADLAGEEELIDSISK-----GEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLISSIKEFKAGKLEFRADRAGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 7.086e-22 Identity = 71/170 (41.76%), Postives = 94/170 (55.29%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKF---LEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKRF Q E + L+ A+SL+K ++ KF ET EAH RL IDPKY DQQLR TV+LPKGTG+S+++AV +GEK EAK A A+LVG ++L++ I G Q L P K L PR PK G V +FK K+++R + G+ Sbjct: 5 SKRFKAAQATVEPRAYAPLE-AVSLVKANATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPKGTGRSIRIAVITRGEKVAEAKAAGAELVGDEELVDS----IAGGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTTDVTNAINEFKAGKLEFRADRSGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_PORYE (50S ribosomal protein L1, chloroplastic OS=Porphyra yezoensis GN=rpl1 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 7.086e-22 Identity = 65/153 (42.48%), Postives = 88/153 (57.52%), Query Frame = 3 Query: 540 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 K Y + A+S+LK S+ KF ETAEAH L ++PKY DQQLRATV LPKGTGK +KVAV A+GEK EA +A AD+ G ++LI++I + + + + L PR PK G V + +FK KV+YR + G+ Sbjct: 18 KLYTINEAVSILKATSNAKFKETAEAHIALGLNPKYADQQLRATVILPKGTGKLIKVAVIAKGEKLTEAISAGADVSGSEELIDEILKGRLDFDKLIATPDVMP-LIAKLGRVLGPRGLMPSPKAGTVTLDVAKAVNEFKGGKVEYRVDRTGI 169 The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bpback to top |