DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CAMLR (50S ribosomal protein L1 OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.131e-23
Identity = 51/102 (50.00%), Postives = 71/102 (69.61%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            +KRF E+    +  K Y +  AIS +K ++S KF ET E   +LN+DP++ DQ +R +V LP GTGK V+VAV A+  K DEAKNA AD+VG DDL+E+I++
Sbjct:    5 TKRFTELLKKIDSNKNYLMDEAISTVKTLASAKFDETVEIALKLNVDPRHADQMVRGSVVLPCGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEIQK 106          

HSP 2 Score: 25.409 bits (54), Expect = 5.131e-23
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ QA
Sbjct:  128 GRILGPKGLMPNPKTGTVTMDVAQA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_GUITH (50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.093e-22
Identity = 67/167 (40.12%), Postives = 93/167 (55.69%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR  E++N  E K  Y    A++LLK  ++ KF E+AEAH  L +D KY DQQLR T+ LPKGTGK +++AV A+GEK  EA NA ADL G  DL++ I + +    +      +         K L PR     PK G V        ++FK+ K++YR +  G+
Sbjct:    5 SKRISEVRNKIENKP-YKAIEALNLLKDTATAKFVESAEAHIALKLDTKYADQQLRTTLVLPKGTGKKIRIAVIAEGEKATEAINAGADLAGSTDLVQDIMKGMLDFDRLIATPDMMP-LIAKLGKVLGPRGLMPSPKSGTVTSDVKSAIEEFKKGKLEYRADKSGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROMM (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.435e-22
Identity = 68/155 (43.87%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  546 YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            Y    AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP+GTG+SV++AV ++GEK  EAK A A+L G DDL+E I     G  Q +    I      PK     + L PR     PK G V        K+FK  K+++R +  G+
Sbjct:   20 YQPLEAIQLVKENATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPQGTGQSVRIAVISRGEKLAEAKTAGAELAGDDDLVESI-----GKGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRADRAGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ACAM1 (50S ribosomal protein L1 OS=Acaryochloris marina (strain MBIC 11017) GN=rplA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.181e-22
Identity = 69/170 (40.59%), Postives = 100/170 (58.82%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEK---FLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            S+R  E++   E +  Y+   A+ LL + ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG+ V++AV A+GEK  EA +A AD+VG ++LI +I++   G    + L        P   K    L PR     PK G V    P+  ++FK  K+++R +  G+
Sbjct:    6 SRRMRELKQQVEDRA-YEPLEALELLCKTATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQEVRIAVVARGEKVKEATDAGADVVGSEELITEIQQ---GRMDFDLLIATPD-MMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIEEFKAGKLEFRADRTGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HELHP (50S ribosomal protein L1 OS=Helicobacter hepaticus GN=rplA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.239e-22
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            +KR   +Q   E +K Y +++ +S +K ++S KF ET E   RL +DP++ DQ +R  V LP GTGK V+VAV A+G K DEAKNA AD+VG DDL E+IK
Sbjct:    6 AKRLQTLQAKVEPQKVYSIQSGVSAVKSLASAKFDETVEVALRLGVDPRHADQMIRGAVVLPHGTGKKVRVAVFAKGIKADEAKNAGADVVGADDLAEEIK 106          

HSP 2 Score: 23.8682 bits (50), Expect = 3.239e-22
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  129 GRILGPKGLMPNPKTGTVTIDVAKA 153          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROM4 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.154e-22
Identity = 65/167 (38.92%), Postives = 95/167 (56.89%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   + +  E +  Y    AI+L+K+ S+ KF ET EAH RL IDPKY DQQ+R TV+LP GTG+++++AV A+GEK  EAK+A ADL G ++L++ I +   G         +   +     + L PR     PK G V        K+FK  K+++R +  G+
Sbjct:    5 SKRMASLSSKIEDRA-YPPLEAINLVKESSTAKFDETIEAHVRLGIDPKYTDQQIRTTVTLPNGTGQTIRIAVIARGEKVAEAKSAGADLAGEEELVDSISKGEMGFDLLIATPDMMP-KVAKLGRVLGPRGLMPNPKTGTVTADLVGAIKEFKAGKLEFRADKAGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROM3 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplA PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 4.154e-22
Identity = 67/150 (44.67%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  561 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP+GTG+SV++AV  +GEK  EAK A A+L G DDL+E I     G  Q +    I      PK     + L PR     PK G V        K+FK  K+++R +  G+
Sbjct:   25 AIQLVKENATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPQGTGQSVRIAVITRGEKLAEAKTAGAELAGDDDLVESI-----GKGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRADRAGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROMA (50S ribosomal protein L1 OS=Prochlorococcus marinus GN=rplA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.426e-22
Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 3
Query:  540 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            K Y    AI L+K+ ++ KF ET EAH RL IDPKY DQQ+R TVSLPKGTG+ V++AV A+GEK  EA +A ADL G ++LI+ I +      + N    I+     PK     + L PR     PK G V        K+FK  K+++R +  G+
Sbjct:   18 KSYAPLEAIQLVKENANAKFDETIEAHIRLGIDPKYTDQQIRTTVSLPKGTGQKVRIAVIAKGEKVAEANSAGADLAGEEELIDSISK-----GEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLISSIKEFKAGKLEFRADRAGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 7.086e-22
Identity = 71/170 (41.76%), Postives = 94/170 (55.29%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKF---LEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKRF   Q   E +    L+ A+SL+K  ++ KF ET EAH RL IDPKY DQQLR TV+LPKGTG+S+++AV  +GEK  EAK A A+LVG ++L++     I G Q    L        P   K    L PR     PK G V         +FK  K+++R +  G+
Sbjct:    5 SKRFKAAQATVEPRAYAPLE-AVSLVKANATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPKGTGRSIRIAVITRGEKVAEAKAAGAELVGDEELVDS----IAGGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTTDVTNAINEFKAGKLEFRADRSGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_PORYE (50S ribosomal protein L1, chloroplastic OS=Porphyra yezoensis GN=rpl1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 7.086e-22
Identity = 65/153 (42.48%), Postives = 88/153 (57.52%), Query Frame = 3
Query:  540 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            K Y +  A+S+LK  S+ KF ETAEAH  L ++PKY DQQLRATV LPKGTGK +KVAV A+GEK  EA +A AD+ G ++LI++I +      +      +         + L PR     PK G V     +   +FK  KV+YR +  G+
Sbjct:   18 KLYTINEAVSILKATSNAKFKETAEAHIALGLNPKYADQQLRATVILPKGTGKLIKVAVIAKGEKLTEAISAGADVSGSEELIDEILKGRLDFDKLIATPDVMP-LIAKLGRVLGPRGLMPSPKAGTVTLDVAKAVNEFKGGKVEYRVDRTGI 169          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CAMLR5.131e-2350.0050S ribosomal protein L1 OS=Campylobacter lari (st... [more]
RK1_GUITH1.093e-2240.1250S ribosomal protein L1, chloroplastic OS=Guillar... [more]
RL1_PROMM2.435e-2243.8750S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_ACAM13.181e-2240.5950S ribosomal protein L1 OS=Acaryochloris marina (... [more]
RL1_HELHP3.239e-2250.5050S ribosomal protein L1 OS=Helicobacter hepaticus... [more]
RL1_PROM44.154e-2238.9250S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM34.154e-2244.6750S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROMA5.426e-2242.6850S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_SYNR37.086e-2241.7650S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RK1_PORYE7.086e-2242.4850S ribosomal protein L1, chloroplastic OS=Porphyr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
back to top