DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THETH (50S ribosomal protein L1 OS=Thermus thermophilus GN=rplA PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 54/162 (33.33%), Postives = 84/162 (51.85%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN 986
            KR+  +    +  K Y +  A  L+K++++ KF ET E H +L IDP+ +DQ +R TVSLP G GK V+V   A+GEK  EA+ A AD VGG+++I++I               + G       + L PR     PK G V        ++ K  ++++R +
Sbjct:    6 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRND 167          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THET2 (50S ribosomal protein L1 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplA PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 54/162 (33.33%), Postives = 84/162 (51.85%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN 986
            KR+  +    +  K Y +  A  L+K++++ KF ET E H +L IDP+ +DQ +R TVSLP G GK V+V   A+GEK  EA+ A AD VGG+++I++I               + G       + L PR     PK G V        ++ K  ++++R +
Sbjct:    6 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRND 167          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SILPO (50S ribosomal protein L1 OS=Silicibacter pomeroyi GN=rplA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 55/150 (36.67%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  534 GKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            GK+E  ++ A++L+K  +S KF ET E    L +DP++ DQ +R  V LP GTGK+V+VAV A+G K +EA+ A AD+VG +DL+E I+     ++   C+ T +      +  K L PR+    PK+G V     +  +  K  +V+++
Sbjct:   17 GKEELSVEQAVALIKSAASAKFDETVEIAMNLGVDPRHADQMVRGVVGLPNGTGKTVRVAVFARGPKAEEAQAAGADIVGAEDLMETIQS--GKIEFDRCIATPDMMPVVGRLGKILGPRNLMPNPKVGTVTMDVAQAVQNAKGGEVQFK 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHOPT (50S ribosomal protein L1 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 59/159 (37.11%), Postives = 87/159 (54.72%), Query Frame = 3
Query:  516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            ++ +REG    K Y L  A+ L+K+ + +KF ET E    L +DP++ DQ +R  V LP GTG++V+V V A+G K DEAK A AD+VG +DL+EQ+  +   +    C+ T +      +  K L PR     PK+G V        K  K   V++R
Sbjct:    7 LKKIREGIDRTKLYPLDEAVKLVKERAISKFDETIEVAINLGVDPRHADQMVRGVVMLPNGTGRTVRVGVFARGAKADEAKAAGADVVGAEDLVEQV--QAGNINFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFR 163          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHOPA (50S ribosomal protein L1 OS=Rhodopseudomonas palustris GN=rplA PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 59/159 (37.11%), Postives = 87/159 (54.72%), Query Frame = 3
Query:  516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            ++ +REG    K Y L  A+ L+K+ + +KF ET E    L +DP++ DQ +R  V LP GTG++V+V V A+G K DEAK A AD+VG +DL+EQ+  +   +    C+ T +      +  K L PR     PK+G V        K  K   V++R
Sbjct:    7 LKKIREGIDRTKLYPLDEAVKLVKERAISKFDETIEVAINLGVDPRHADQMVRGVVMLPNGTGRTVRVGVFARGAKADEAKAAGADVVGAEDLVEQV--QAGNINFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFR 163          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROMH (50S ribosomal protein L1 OS=Proteus mirabilis (strain HI4320) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 56/171 (32.75%), Postives = 90/171 (52.63%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+Y++  A++LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV AQG   + AK A A+LVG DDL  ++K         +   + +  +         + L PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRNIREKVDVVKQYEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFAQGANAEAAKEAGAELVGMDDLAAKVKAGEMDFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_POLSQ (50S ribosomal protein L1 OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 63/174 (36.21%), Postives = 93/174 (53.45%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR-------RIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   IQ+  +  K Y L+ A++L+K+ ++ KF E+ +   +L ID K +DQ +R  V LP GTGK V+VAV AQGEK ++AK A A++VG ++L EQIK         I        + T+         + L PR     PK+G V P      K  K  +V++R +  G+
Sbjct:    5 SKRVKAIQSKVDRNKFYPLEDALNLVKECATAKFDESIDVAVQLGIDAKKSDQVVRGAVVLPAGTGKHVRVAVFAQGEKAEQAKAAGAEIVGMEELAEQIKGGKIDFDILIASPDTMKIVGTLG--------QVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HAMD5 (50S ribosomal protein L1 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 58/171 (33.92%), Postives = 87/171 (50.88%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   I+   +  K+YDL  A  LLK++++ KFTE+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + A NA A+LVG DDL  QI+         +   + +  +         + L PR     PK+G V P         K  +++YR + +G+
Sbjct:    5 SKRMRVIREKVDTAKQYDLDDAFLLLKKLATAKFTESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAANNAGAELVGMDDLAAQIRNGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKVGTVTPNIAEAVTNAKAGQIRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_GLUDA (50S ribosomal protein L1 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 61/169 (36.09%), Postives = 90/169 (53.25%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            ++KR    Q   +  K Y L  AI+L+KQ+++ KF ET E    L IDP++ DQ +R  +SLP GTGK+++V V A+G K +EA  A AD+VG +DL E+++       +  C+ T +      +  K L PR     PKLG V           K  +V+YR    G+
Sbjct:    3 KNKRLTAAQATVDRNKAYGLDEAIALVKQVATAKFDETIEISLNLGIDPRHADQMVRGLLSLPNGTGKTLRVGVFARGAKAEEALAAGADVVGAEDLAEKVQAGEIAFDR--CIATPDMMALVGRLGKILGPRGLMPNPKLGTVTMDVKGAVTAAKSGQVEYRAEKAGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_DESAP (50S ribosomal protein L1 OS=Desulforudis audaxviator (strain MP104C) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 54/160 (33.75%), Postives = 88/160 (55.00%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            K+++E     + +K+Y+++ A+ L+++++  KF ET EA  +L +DP++ DQQ+R  V LP GTGK+  V V A+GEK  EA+ A AD VGG++++ +I+        A     +         + L PR     PK G V     R   + K  K++YR
Sbjct:    6 KKYVEAAKQVDSEKQYEVREALELVRKLAPAKFDETVEAAVKLGVDPRHADQQVRGAVVLPHGTGKTRTVLVFAKGEKVTEAEKAGADYVGGEEMVAKIQGGWMEFDVAIATPDMMS-AVGKIGRILGPRGLMPNPKTGTVTFDIARAVAEVKAGKIQYR 164          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_THETH1.383e-1733.3350S ribosomal protein L1 OS=Thermus thermophilus G... [more]
RL1_THET21.383e-1733.3350S ribosomal protein L1 OS=Thermus thermophilus (... [more]
RL1_SILPO1.383e-1736.6750S ribosomal protein L1 OS=Silicibacter pomeroyi ... [more]
RL1_RHOPT1.383e-1737.1150S ribosomal protein L1 OS=Rhodopseudomonas palus... [more]
RL1_RHOPA1.383e-1737.1150S ribosomal protein L1 OS=Rhodopseudomonas palus... [more]
RL1_PROMH1.383e-1732.7550S ribosomal protein L1 OS=Proteus mirabilis (str... [more]
RL1_POLSQ1.383e-1736.2150S ribosomal protein L1 OS=Polynucleobacter sp. (... [more]
RL1_HAMD51.383e-1733.9250S ribosomal protein L1 OS=Hamiltonella defensa s... [more]
RL1_GLUDA1.383e-1736.0950S ribosomal protein L1 OS=Gluconacetobacter diaz... [more]
RL1_DESAP1.383e-1733.7550S ribosomal protein L1 OS=Desulforudis audaxviat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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