DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_AYWBP (50S ribosomal protein L1 OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rplA PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 60/162 (37.04%), Postives = 84/162 (51.85%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            R K++L    + + KK Y L+ AISL KQ    KF  T E  F LN+D K  DQ LR  + LP GTGK +KVAV A+GE+  +A+ A+AD VG  DLI++I +             +   +     + L P+     PK G V     +  K+ K  K++YR
Sbjct:    3 RGKKYLTSLRIFDVKKTYPLQEAISLAKQTQVAKFDATVECAFHLNLDLKKVDQNLRGALVLPHGTGKVLKVAVLAKGEQAKQAQEAQADYVGDQDLIDKIAKNWFDFDVLVATPEMMP-QLSKLGRLLGPKGLMPNPKTGTVTNDVLQAVKEIKNGKIEYR 163          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ARTAT (50S ribosomal protein L1 OS=Arthrobacter aurescens (strain TC1) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 62/166 (37.35%), Postives = 82/166 (49.40%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*H 992
            RSK +       E  K Y    AI+L K  + +KF  T E  FRL +DP+  DQ +R TV+LP GTGK+ +V V A G+K + A  A AD VG DDLIE+I         A     + G +     K L PR+    PK G V P   +     K  K+ +R + H
Sbjct:    4 RSKAYEAAVAKIEADKVYAPIEAITLAKDTNPSKFDATVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDKAEAAIAAGADFVGSDDLIEKIAAGWTDFDAAVATPDLMG-KVGRLGKVLGPRNLMPNPKTGTVTPDVTKAVNDIKGGKIDFRVDKH 168          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ACTP7 (50S ribosomal protein L1 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 56/171 (32.75%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K+   I+   +  K Y++  AI++LKQ ++ KF E+ +    L IDP+ +DQ +R    LP GTG++ +VAV  QG   + AK A ADLVG +DL EQIK+        +   + +  +         + L PR     PK+G V P      K  K  +++YR + +G+
Sbjct:    5 TKKMKAIKAGVDSTKAYEINEAIAVLKQFATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRTARVAVFTQGANAEAAKAAGADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ACTP2 (50S ribosomal protein L1 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.383e-17
Identity = 56/171 (32.75%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K+   I+   +  K Y++  AI++LKQ ++ KF E+ +    L IDP+ +DQ +R    LP GTG++ +VAV  QG   + AK A ADLVG +DL EQIK+        +   + +  +         + L PR     PK+G V P      K  K  +++YR + +G+
Sbjct:    5 TKKMKAIKAGVDSTKAYEINEAIAVLKQFATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRTARVAVFTQGANAEAAKAAGADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_FRAP2 (50S ribosomal protein L1 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rplA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.554e-17
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            SKR  EI    + +K+Y +  A  +L+ +SS KF E+ +    L +DP+ +DQ +R    LP GTGK+V+VAV A+G   D AK A AD+VG +DL +++K+
Sbjct:    5 SKRMKEISAKIDAEKKYPVSEAFDILRDVSSVKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGADVVGMEDLADEVKK 106          

HSP 2 Score: 23.483 bits (49), Expect = 1.554e-17
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  128 GQILGPKGLMPNPKVGTVTMDVAKA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOD6 (50S ribosomal protein L1 OS=Clostridium difficile (strain 630) GN=rplA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.554e-17
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            + KR+       +  K YD   A++L+  ++  KF ET EAH +L +D ++ DQQ+R  V LP GTGK+ +V V A+GEK  EA+ A AD VG ++L+++I+
Sbjct:    4 KGKRYAGALQKVDRTKFYDASEALTLVSDIAGAKFDETVEAHIKLGVDSRHADQQVRGAVVLPHGTGKTKRVLVFAKGEKAKEAEQAGADFVGAEELVQKIQ 105          

HSP 2 Score: 23.483 bits (49), Expect = 1.554e-17
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++ +A
Sbjct:  129 GRVLGPKGLMPNPKSGTVTFDVAKA 153          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_VIBPA (50S ribosomal protein L1 OS=Vibrio parahaemolyticus GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 57/177 (32.20%), Postives = 90/177 (50.85%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR----------RIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  KEY++  A++LL+++++ KF E+ +    L ID + +DQ +R    LP GTG+ ++VAV  QG   + AK A AD+VG +DL EQ+K+              ++    L TI G           PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDVTKEYEINEAVALLQELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFTQGANAEAAKEAGADIVGMEDLAEQVKKGEMNFDVVVASPDAMRVVGQLGTILG-----------PRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_VIBHB (50S ribosomal protein L1 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 57/177 (32.20%), Postives = 90/177 (50.85%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR----------RIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  KEY++  A++LL+++++ KF E+ +    L ID + +DQ +R    LP GTG+ ++VAV  QG   + AK A AD+VG +DL EQ+K+              ++    L TI G           PR     PK+G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRMRVIREKVDVTKEYEINEAVALLQELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGREIRVAVFTQGANAEAAKEAGADIVGMEDLAEQVKKGEMNFDVVVASPDAMRVVGQLGTILG-----------PRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_TERTT (50S ribosomal protein L1 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 60/171 (35.09%), Postives = 86/171 (50.29%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I    +  K Y +  A++LLK++S+ KF ET +A   L IDP+ +DQ +R   SLP GTGK V+VAV  QG   D AK A A+ VG +DL +QIK  +      +     +  +         + L PR     PK G V P      K  K  +V++R +  G+
Sbjct:    5 TKRQKAINEKVDFNKAYGIDEAVALLKELSTVKFPETVDAAINLGIDPRKSDQAVRGATSLPHGTGKDVRVAVFTQGAAADAAKEAGAEFVGMEDLADQIKGGMMDFDVVIADPAAMRVVGA-----LGQILGPRGLMPNPKTGTVTPDVAGAVKNAKAGQVRFRADKGGV 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RALPJ (50S ribosomal protein L1 OS=Ralstonia pickettii (strain 12J) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 64/174 (36.78%), Postives = 92/174 (52.87%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR    +   E  K Y +  A+SL+K+ +S KF E+ +   +L ID K +DQ +R +V LP GTGKSV+VAV AQG+K ++AK A A++VG +DL EQIK         I        + T+         + L PR     PK+G V P      K  K  +V++R +  G+
Sbjct:    5 SKRAAANKAKVERTKFYPIDEALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGDKAEQAKAAGAEIVGMEDLAEQIKAGKMDFDVVIASPDTMRVVGTLG--------QILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGI 170          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_AYWBP1.383e-1737.0450S ribosomal protein L1 OS=Aster yellows witches'... [more]
RL1_ARTAT1.383e-1737.3550S ribosomal protein L1 OS=Arthrobacter aurescens... [more]
RL1_ACTP71.383e-1732.7550S ribosomal protein L1 OS=Actinobacillus pleurop... [more]
RL1_ACTP21.383e-1732.7550S ribosomal protein L1 OS=Actinobacillus pleurop... [more]
RL1_FRAP21.554e-1742.1650S ribosomal protein L1 OS=Francisella philomirag... [more]
RL1_CLOD61.554e-1741.1850S ribosomal protein L1 OS=Clostridium difficile ... [more]
RL1_VIBPA1.806e-1732.2050S ribosomal protein L1 OS=Vibrio parahaemolyticu... [more]
RL1_VIBHB1.806e-1732.2050S ribosomal protein L1 OS=Vibrio harveyi (strain... [more]
RL1_TERTT1.806e-1735.0950S ribosomal protein L1 OS=Teredinibacter turnera... [more]
RL1_RALPJ1.806e-1736.7850S ribosomal protein L1 OS=Ralstonia pickettii (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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