DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_POLNS (50S ribosomal protein L1 OS=Polynucleobacter necessarius (strain STIR1) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 63/174 (36.21%), Postives = 92/174 (52.87%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR-------RIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   IQ+  +  K Y L  A++L+K+ ++ KF E+ +   +L ID K +DQ +R  V LP GTGK V+VAV AQGEK ++AK A A++VG +DL +QIK         I        + T+         + L PR     PK+G V P      K  K  +V++R +  G+
Sbjct:    5 SKRVKVIQSKIDRNKFYSLDDALNLVKECATAKFDESIDVAVQLGIDAKKSDQVVRGAVVLPAGTGKYVRVAVFAQGEKAEQAKAAGAEIVGMEDLADQIKSGKIDFDVLIASPDTMKIVGTLG--------QVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_NEIMF (50S ribosomal protein L1 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   +++  E  K Y +  AI+L+K+ ++ KF E+ +  F L +DP+ +DQ +R +V LPKGTGK  +VAV  QG   + AK A AD+VG +DL  +IK     L     + + +  R   +    L PR     PK+G V P      K  K  +V+YR +  G+
Sbjct:    5 SKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDVSFNLGVDPRKSDQVIRGSVVLPKGTGKITRVAVFTQGANAEAAKEAGADIVGFEDLAAEIK--AGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVQYRTDKAGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_NEIMB (50S ribosomal protein L1 OS=Neisseria meningitidis serogroup B GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   +++  E  K Y +  AI+L+K+ ++ KF E+ +  F L +DP+ +DQ +R +V LPKGTGK  +VAV  QG   + AK A AD+VG +DL  +IK     L     + + +  R   +    L PR     PK+G V P      K  K  +V+YR +  G+
Sbjct:    5 SKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDVSFNLGVDPRKSDQVIRGSVVLPKGTGKITRVAVFTQGANAEAAKEAGADIVGFEDLAAEIK--AGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVQYRTDKAGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_NEIMA (50S ribosomal protein L1 OS=Neisseria meningitidis serogroup A GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   +++  E  K Y +  AI+L+K+ ++ KF E+ +  F L +DP+ +DQ +R +V LPKGTGK  +VAV  QG   + AK A AD+VG +DL  +IK     L     + + +  R   +    L PR     PK+G V P      K  K  +V+YR +  G+
Sbjct:    5 SKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDVSFNLGVDPRKSDQVIRGSVVLPKGTGKITRVAVFTQGANAEAAKEAGADIVGFEDLAAEIK--AGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVQYRTDKAGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HAEPS (50S ribosomal protein L1 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K+   I+   +  K Y++  AI++LKQ ++ KF E+ +    L IDP+ +DQ +R    LP GTG++ +VAV  QG   + AK A ADLVG +DL EQ+K+        +   + +  +         + L PR     PK+G V P      K  K  +++YR + +G+
Sbjct:    5 TKKMKAIKAGVDSTKAYEINEAIAVLKQFATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRTARVAVFTQGANAEAAKAAGADLVGMEDLAEQVKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_COLP3 (50S ribosomal protein L1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 57/171 (33.33%), Postives = 88/171 (51.46%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   I+   +  KEYD+  A+SLLK+ ++  F E+ +    L ID + +DQ +R    LP GTG+ V+VAV  QGE  ++AK A AD+VG +DL  Q+K         +   + +  +         + L PR     PK+G V P      K  K  +++YR + +G+
Sbjct:    5 SKRARLIREKVDVTKEYDINEAVSLLKEFATANFRESVDVAVNLGIDARKSDQNVRGATVLPNGTGREVRVAVFTQGENAEKAKAAGADIVGMEDLAAQVKAGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKVGTVTPDVAGAVKNAKSGQIRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BURVG (50S ribosomal protein L1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 62/174 (35.63%), Postives = 94/174 (54.02%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR    +   + +K Y ++ A++L+K+ +S KF E+ +   +L ID K +DQ +R +V LP GTGKSV+VAV AQGEK ++A+ A A++VG +DL EQIK         I        + T+         + L PR     PK+G V P      K  K  +V++R +  G+
Sbjct:    5 SKRRQAFEAKVDRQKLYAIEDALALVKECASAKFNESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEIVGMEDLAEQIKAGQMDFDIVIASPDTMRIVGTLG--------QILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BARHE (50S ribosomal protein L1 OS=Bartonella henselae GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 59/159 (37.11%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            I+N+R+     + Y LK A+S++K+ +  KF ET E    L +DP++ DQ +R  V LP GTG++V+VAV A+G+K +EAK A AD+VG +DL E I      +    C+ T +      +  K L PR+    PK+G V        K  K   V++R
Sbjct:    8 IKNIRKDINFNELYALKDAVSMVKERAIAKFDETIEISMNLGVDPRHADQMVRGVVHLPNGTGRNVRVAVFARGDKAEEAKTAGADIVGAEDLFESING--GAIDFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTLDVANAVKASKGGAVEFR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ARTCA (50S ribosomal protein L1 OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 60/166 (36.14%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*H 992
            RSK +       + +K Y    A++L K  + +KF  T E  FRL +DP+  DQ +R TV+LP GTGK+ +V V A G+K + A  A AD VG DDLIE+I         A     + G +     K L PR+    PK G V P   +     K  K+ +R + H
Sbjct:    4 RSKAYEAAAAKIDAEKSYAPFEAVTLAKDTNPSKFDATIEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDKAEAAIAAGADFVGSDDLIEKIAGGWTDFDAAVATPDLMG-KVGRLGKVLGPRNLMPNPKTGTVTPDVTKAVNDIKGGKIDFRVDKH 168          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ALISL (50S ribosomal protein L1 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR----------RIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   E  K+Y++  AI+LLK++++  F E+ +    L ID + +DQ +R    LP GTG++V+VAV  QG   + AK A ADLVG +DL E +K+              ++    L TI G           PR     PK+G V P   +  K  K  +V+YR + +G+
Sbjct:    5 TKRMRNIREKVEVTKDYEINEAIALLKELATANFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRNVRVAVFTQGANAEAAKEAGADLVGMEDLAELVKKGEMNFDVVVASPDAMRVVGQLGTILG-----------PRGLMPNPKVGTVTPNVAQAVKNAKAGQVRYRNDKNGI 170          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_POLNS1.806e-1736.2150S ribosomal protein L1 OS=Polynucleobacter neces... [more]
RL1_NEIMF1.806e-1735.7150S ribosomal protein L1 OS=Neisseria meningitidis... [more]
RL1_NEIMB1.806e-1735.7150S ribosomal protein L1 OS=Neisseria meningitidis... [more]
RL1_NEIMA1.806e-1735.7150S ribosomal protein L1 OS=Neisseria meningitidis... [more]
RL1_HAEPS1.806e-1732.1650S ribosomal protein L1 OS=Haemophilus parasuis s... [more]
RL1_COLP31.806e-1733.3350S ribosomal protein L1 OS=Colwellia psychrerythr... [more]
RL1_BURVG1.806e-1735.6350S ribosomal protein L1 OS=Burkholderia vietnamie... [more]
RL1_BARHE1.806e-1737.1150S ribosomal protein L1 OS=Bartonella henselae GN... [more]
RL1_ARTCA1.806e-1736.1450S ribosomal protein L1 OS=Arthrobacter chlorophe... [more]
RL1_ALISL1.806e-1733.3350S ribosomal protein L1 OS=Aliivibrio salmonicida... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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