DY257117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_POLNS (50S ribosomal protein L1 OS=Polynucleobacter necessarius (strain STIR1) GN=rplA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17 Identity = 63/174 (36.21%), Postives = 92/174 (52.87%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR-------RIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR IQ+ + K Y L A++L+K+ ++ KF E+ + +L ID K +DQ +R V LP GTGK V+VAV AQGEK ++AK A A++VG +DL +QIK I + T+ + L PR PK+G V P K K +V++R + G+ Sbjct: 5 SKRVKVIQSKIDRNKFYSLDDALNLVKECATAKFDESIDVAVQLGIDAKKSDQVVRGAVVLPAGTGKYVRVAVFAQGEKAEQAKAAGAEIVGMEDLADQIKSGKIDFDVLIASPDTMKIVGTLG--------QVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_NEIMF (50S ribosomal protein L1 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17 Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR +++ E K Y + AI+L+K+ ++ KF E+ + F L +DP+ +DQ +R +V LPKGTGK +VAV QG + AK A AD+VG +DL +IK L + + + R + L PR PK+G V P K K +V+YR + G+ Sbjct: 5 SKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDVSFNLGVDPRKSDQVIRGSVVLPKGTGKITRVAVFTQGANAEAAKEAGADIVGFEDLAAEIK--AGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVQYRTDKAGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_NEIMB (50S ribosomal protein L1 OS=Neisseria meningitidis serogroup B GN=rplA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17 Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR +++ E K Y + AI+L+K+ ++ KF E+ + F L +DP+ +DQ +R +V LPKGTGK +VAV QG + AK A AD+VG +DL +IK L + + + R + L PR PK+G V P K K +V+YR + G+ Sbjct: 5 SKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDVSFNLGVDPRKSDQVIRGSVVLPKGTGKITRVAVFTQGANAEAAKEAGADIVGFEDLAAEIK--AGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVQYRTDKAGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_NEIMA (50S ribosomal protein L1 OS=Neisseria meningitidis serogroup A GN=rplA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17 Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR +++ E K Y + AI+L+K+ ++ KF E+ + F L +DP+ +DQ +R +V LPKGTGK +VAV QG + AK A AD+VG +DL +IK L + + + R + L PR PK+G V P K K +V+YR + G+ Sbjct: 5 SKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDVSFNLGVDPRKSDQVIRGSVVLPKGTGKITRVAVFTQGANAEAAKEAGADIVGFEDLAAEIK--AGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVQYRTDKAGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HAEPS (50S ribosomal protein L1 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rplA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17 Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 +K+ I+ + K Y++ AI++LKQ ++ KF E+ + L IDP+ +DQ +R LP GTG++ +VAV QG + AK A ADLVG +DL EQ+K+ + + + + + L PR PK+G V P K K +++YR + +G+ Sbjct: 5 TKKMKAIKAGVDSTKAYEINEAIAVLKQFATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRTARVAVFTQGANAEAAKAAGADLVGMEDLAEQVKKGEMNFDVVIASPDAMRVVG-----QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_COLP3 (50S ribosomal protein L1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rplA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17 Identity = 57/171 (33.33%), Postives = 88/171 (51.46%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR I+ + KEYD+ A+SLLK+ ++ F E+ + L ID + +DQ +R LP GTG+ V+VAV QGE ++AK A AD+VG +DL Q+K + + + + + L PR PK+G V P K K +++YR + +G+ Sbjct: 5 SKRARLIREKVDVTKEYDINEAVSLLKEFATANFRESVDVAVNLGIDARKSDQNVRGATVLPNGTGREVRVAVFTQGENAEKAKAAGADIVGMEDLAAQVKAGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKVGTVTPDVAGAVKNAKSGQIRYRNDKNGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BURVG (50S ribosomal protein L1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rplA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17 Identity = 62/174 (35.63%), Postives = 94/174 (54.02%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR + + +K Y ++ A++L+K+ +S KF E+ + +L ID K +DQ +R +V LP GTGKSV+VAV AQGEK ++A+ A A++VG +DL EQIK I + T+ + L PR PK+G V P K K +V++R + G+ Sbjct: 5 SKRRQAFEAKVDRQKLYAIEDALALVKECASAKFNESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEIVGMEDLAEQIKAGQMDFDIVIASPDTMRIVGTLG--------QILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BARHE (50S ribosomal protein L1 OS=Bartonella henselae GN=rplA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17 Identity = 59/159 (37.11%), Postives = 88/159 (55.35%), Query Frame = 3 Query: 516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 I+N+R+ + Y LK A+S++K+ + KF ET E L +DP++ DQ +R V LP GTG++V+VAV A+G+K +EAK A AD+VG +DL E I + C+ T + + K L PR+ PK+G V K K V++R Sbjct: 8 IKNIRKDINFNELYALKDAVSMVKERAIAKFDETIEISMNLGVDPRHADQMVRGVVHLPNGTGRNVRVAVFARGDKAEEAKTAGADIVGAEDLFESING--GAIDFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTLDVANAVKASKGGAVEFR 164
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ARTCA (50S ribosomal protein L1 OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=rplA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17 Identity = 60/166 (36.14%), Postives = 83/166 (50.00%), Query Frame = 3 Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*H 992 RSK + + +K Y A++L K + +KF T E FRL +DP+ DQ +R TV+LP GTGK+ +V V A G+K + A A AD VG DDLIE+I A + G + K L PR+ PK G V P + K K+ +R + H Sbjct: 4 RSKAYEAAAAKIDAEKSYAPFEAVTLAKDTNPSKFDATIEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDKAEAAIAAGADFVGSDDLIEKIAGGWTDFDAAVATPDLMG-KVGRLGKVLGPRNLMPNPKTGTVTPDVTKAVNDIKGGKIDFRVDKH 168
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ALISL (50S ribosomal protein L1 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17 Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR----------RIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 +KR I+ E K+Y++ AI+LLK++++ F E+ + L ID + +DQ +R LP GTG++V+VAV QG + AK A ADLVG +DL E +K+ ++ L TI G PR PK+G V P + K K +V+YR + +G+ Sbjct: 5 TKRMRNIREKVEVTKDYEINEAIALLKELATANFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRNVRVAVFTQGANAEAAKEAGADLVGMEDLAELVKKGEMNFDVVVASPDAMRVVGQLGTILG-----------PRGLMPNPKVGTVTPNVAQAVKNAKAGQVRYRNDKNGI 170 The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bpback to top |