DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_NITEC (50S ribosomal protein L1 OS=Nitrosomonas eutropha (strain C91) GN=rplA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.020e-17
Identity = 45/101 (44.55%), Postives = 68/101 (67.33%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            S+R+ EI    +  + Y L  A++L+K++++ KF E+ +    L ID + +DQ +R  V LP GTGK+V+VAV AQG+K  EA +A AD+VG +DL EQ+K
Sbjct:    5 SRRYKEIAQKIDRDRLYPLTDALALVKEVATAKFDESVDIAINLGIDVRKSDQVVRGAVVLPSGTGKTVRVAVFAQGDKAKEALDAGADIVGLEDLAEQVK 105          

HSP 2 Score: 23.0978 bits (48), Expect = 2.020e-17
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++  A
Sbjct:  128 GQILGPRGLMPNPKVGTVTLDVASA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BACSK (50S ribosomal protein L1 OS=Bacillus clausii (strain KSM-K16) GN=rplA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.020e-17
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            + K++ +   L +    Y  + A+ L+K+ S  KF ET E   RL +DPK  DQQ+R  V LP GTGK+ +V V A+GEK  EA+ A AD VG DDLI +I +
Sbjct:    4 KGKKYADALKLVDRDTAYQAEEALELVKKTSVAKFDETVEVAVRLGVDPKKADQQIRGAVVLPHGTGKTQRVLVFAKGEKAKEAEAAGADYVGEDDLINKINQ 106          

HSP 2 Score: 23.0978 bits (48), Expect = 2.020e-17
Identity = 10/25 (40.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K GT T ++ +A
Sbjct:  128 GRVLGPKGLMPNPKTGTVTFDVTKA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PSYWF (50S ribosomal protein L1 OS=Psychrobacter sp. (strain PRwf-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.020e-17
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            +KR   I    E +K Y L+ A+S+L  +   KF E+ +    L +DP+ +DQ +R   +LP GTGK+ +VAV AQG   D AK A AD+VG DDL EQ+K
Sbjct:    5 TKRQKMIAERVESQKLYTLEEAVSILNDLPPLKFKESVDIAINLGVDPRKSDQVVRGATNLPAGTGKTKRVAVFAQGAAADAAKEAGADVVGMDDLAEQVK 105          

HSP 2 Score: 25.0238 bits (53), Expect = 2.020e-17
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  890 GLLPNSKAGTGTTNLPQA 943
            GL+PN K GT T N+ +A
Sbjct:  135 GLMPNPKVGTVTPNVAEA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_LACS1 (50S ribosomal protein L1 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rplA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.021e-17
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            + +SK++LE     E  K Y+   A  L+K++    F  T E  F LN+D K  DQQLR  + LP GTGK   V V A+G K  EAK+A AD+VG DDL+ +I+
Sbjct:    3 KKKSKKYLEAAKQVEEGKLYNASEAFGLVKKIDFANFDATIEVAFNLNVDTKQADQQLRGAMVLPNGTGKDQTVVVFAKGAKAQEAKDAGADVVGDDDLVARIQ 106          

HSP 2 Score: 23.483 bits (49), Expect = 2.021e-17
Identity = 10/25 (40.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K GT T ++ +A
Sbjct:  129 GRVLGPKGLMPNPKTGTVTMDVTKA 153          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SULSY (50S ribosomal protein L1 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.359e-17
Identity = 62/169 (36.69%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSST---KFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            R K++LE   L + +K Y L  AI  LK++      KF ET E  FRL +DPKY DQ +R +V LP G G+ +KV V A GEK  EA+ A AD  GG+++I +I          +    I      PK     K L PR     PK+G V     R   + K+ +V+++
Sbjct:    4 RGKKYLEALKLIDKEKTYSLDEAIQKLKEVEKILQRKFDETVELIFRLGVDPKYADQMVRGSVVLPHGLGRELKVLVIASGEKLKEAEEAGADYAGGEEIINKIANE----NWIDFDIVIATPDMMPKLAKLGKILGPRGLMPNPKVGTVTTDVKRAVTEAKKGRVEFK 168          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHOS5 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.359e-17
Identity = 58/149 (38.93%), Postives = 85/149 (57.05%), Query Frame = 3
Query:  480 KRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLV 923
            KR R   + F+       GK    ++ A++L+K  +S KF ET E    L +DP++ DQ +R  V+LP GTGK+V+VAV A+G K DEAK A AD+VG +DL+E I+     ++   C+ T +      +  K L PR+    PK+G V
Sbjct:    6 KRTRAAREAFV-------GKDMVSVEDAVALIKGAASAKFDETLEVAMNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLMETIQS--GKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTV 145          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BURS3 (50S ribosomal protein L1 OS=Burkholderia sp. (strain 383) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.359e-17
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  537 KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K Y ++ A+SL+K+ +S KF E+ +   +L ID K +DQ +R +V LP GTGKSV+VAV AQGEK ++A+ A A++VG +DL EQIK         I        + T+         + L PR     PK+G V P      K  K  +V++R +  G+
Sbjct:   18 QKLYAIEEALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEIVGMEDLAEQIKAGQMDFDIVIASPDTMRIVGTLG--------QILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BURCJ (50S ribosomal protein L1 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.359e-17
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  537 KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K Y ++ A+SL+K+ +S KF E+ +   +L ID K +DQ +R +V LP GTGKSV+VAV AQGEK ++A+ A A++VG +DL EQIK         I        + T+         + L PR     PK+G V P      K  K  +V++R +  G+
Sbjct:   18 QKLYAIEDALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEIVGMEDLAEQIKAGQMDFDIVIASPDTMRIVGTLG--------QILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BURCH (50S ribosomal protein L1 OS=Burkholderia cenocepacia (strain HI2424) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.359e-17
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  537 KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K Y ++ A+SL+K+ +S KF E+ +   +L ID K +DQ +R +V LP GTGKSV+VAV AQGEK ++A+ A A++VG +DL EQIK         I        + T+         + L PR     PK+G V P      K  K  +V++R +  G+
Sbjct:   18 QKLYAIEDALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEIVGMEDLAEQIKAGQMDFDIVIASPDTMRIVGTLG--------QILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BURCC (50S ribosomal protein L1 OS=Burkholderia cenocepacia (strain MC0-3) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.359e-17
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  537 KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K Y ++ A+SL+K+ +S KF E+ +   +L ID K +DQ +R +V LP GTGKSV+VAV AQGEK ++A+ A A++VG +DL EQIK         I        + T+         + L PR     PK+G V P      K  K  +V++R +  G+
Sbjct:   18 QKLYAIEDALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEIVGMEDLAEQIKAGQMDFDIVIASPDTMRIVGTLG--------QILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGI 170          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_NITEC2.020e-1744.5550S ribosomal protein L1 OS=Nitrosomonas eutropha ... [more]
RL1_BACSK2.020e-1744.6650S ribosomal protein L1 OS=Bacillus clausii (stra... [more]
RL1_PSYWF2.020e-1744.5550S ribosomal protein L1 OS=Psychrobacter sp. (str... [more]
RL1_LACS12.021e-1744.2350S ribosomal protein L1 OS=Lactobacillus salivari... [more]
RL1_SULSY2.359e-1736.6950S ribosomal protein L1 OS=Sulfurihydrogenibium s... [more]
RL1_RHOS52.359e-1738.9350S ribosomal protein L1 OS=Rhodobacter sphaeroide... [more]
RL1_BURS32.359e-1737.2750S ribosomal protein L1 OS=Burkholderia sp. (stra... [more]
RL1_BURCJ2.359e-1737.2750S ribosomal protein L1 OS=Burkholderia cepacia (... [more]
RL1_BURCH2.359e-1737.2750S ribosomal protein L1 OS=Burkholderia cenocepac... [more]
RL1_BURCC2.359e-1737.2750S ribosomal protein L1 OS=Burkholderia cenocepac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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