DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BURCA (50S ribosomal protein L1 OS=Burkholderia cenocepacia (strain AU 1054) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.359e-17
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 3 
Query:  537 KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +K Y ++ A+SL+K+ +S KF E+ +   +L ID K +DQ +R +V LP GTGKSV+VAV AQGEK ++A+ A A++VG +DL EQIK         I        + T+         + L PR     PK+G V P      K  K  +V++R +  G+
Sbjct:   18 QKLYAIEDALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEIVGMEDLAEQIKAGQMDFDIVIASPDTMRIVGTLG--------QILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BARQU (50S ribosomal protein L1 OS=Bartonella quintana GN=rplA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.359e-17
Identity = 59/165 (35.76%), Postives = 89/165 (53.94%), Query Frame = 3 
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            R  +KR  +I+   +  + Y LK A+S++K+ +  KF ET E    L +DP++ DQ +R    LP GTG++V+VAV A+GEK +EAK + AD+VG +DL E I      +    C+ T +      +  K L PR+    PK+G V        K  K   V++R
Sbjct:    2 RKVAKRIKDIRKDIDFNELYALKDAVSMVKERAVAKFDETIEISMNLGVDPRHADQMVRGVAHLPNGTGRNVRVAVFARGEKAEEAKASGADIVGAEDLFESINSGT--IDFDRCIATPDMMLLVGRLGKILGPRNLMPNPKVGTVTLDVANAVKASKGGAVEFR 164
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ANOFW (50S ribosomal protein L1 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.359e-17
Identity = 61/162 (37.65%), Postives = 82/162 (50.62%), Query Frame = 3 
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            R KR+LE   L +  K Y ++ AI L+K+ +  KF  T E  FRL +DPK  DQQ+R  V LP GTGK  +V V A+GEK  EA+ A AD VG  D I +I++             + G       + L P+     PK G V     +   + K  KV+YR
Sbjct:    4 RGKRYLEAAKLIDRSKAYAVQEAIELVKKTNVAKFDATVEVAFRLGVDPKKADQQIRGAVVLPHGTGKVRRVLVLAKGEKAKEAEAAGADYVGDTDYINKIQQGWFEFDVIVATPDMMG-EVGKIGRILGPKGLMPNPKTGTVTFDVAKAVNEIKAGKVEYR 164
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHOE4 (50S ribosomal protein L1 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.624e-17
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 3 
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            RSK +L      +  K Y    A  L K+ SSTK   T E   RL +DP+  DQ +R TV+LP GTGK+ +V V A GEK  EA+ A AD+VG +DLIE+I+
Sbjct:    4 RSKAYLAAAEKIDADKLYSPLQAAKLAKETSSTKMDATVEVAVRLGVDPRKADQMVRGTVNLPHGTGKTARVIVFAVGEKAAEAEAAGADVVGAEDLIERIQ 105

HSP 2 Score: 23.0978 bits (48), Expect = 2.624e-17
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  890 GLLPNSKAGTGTTNLPQA 943
            GL+PN K GT T ++ +A
Sbjct:  135 GLMPNPKTGTVTADVTKA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_METS4 (50S ribosomal protein L1 OS=Methylobacterium sp. (strain 4-46) GN=rplA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.625e-17
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 3 
Query:  516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            I+  REG    K Y L  A+ ++K  S  KF ET E    L +DP++ DQ +R   +LP G+G++V+VAV A+G K DEA+ A AD+VG +DL+E I+
Sbjct:    8 IRAAREGIDPTKVYSLTDAVKMIKDRSKAKFDETFEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADEARAAGADIVGAEDLLETIQ 105

HSP 2 Score: 23.483 bits (49), Expect = 2.625e-17
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    GL+PN K GT T ++  A
Sbjct:  128 GKVLGPRGLMPNPKVGTVTMDVKGA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_FRATW (50S ribosomal protein L1 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rplA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.626e-17
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            SKR  EI      +K+Y +  A  LL+++SS KF E+ +    L +DP+ +DQ +R    LP GTGK+V+VAV A+G   D AK A A++VG +DL +++K+
Sbjct:    5 SKRMKEISAKINAEKKYPVSEAFDLLREVSSVKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEVKK 106

HSP 2 Score: 23.483 bits (49), Expect = 2.626e-17
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  128 GQILGPKGLMPNPKVGTVTMDVAKA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_FRATT (50S ribosomal protein L1 OS=Francisella tularensis subsp. tularensis GN=rplA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.626e-17
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            SKR  EI      +K+Y +  A  LL+++SS KF E+ +    L +DP+ +DQ +R    LP GTGK+V+VAV A+G   D AK A A++VG +DL +++K+
Sbjct:    5 SKRMKEISAKINAEKKYPVSEAFDLLREVSSVKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEVKK 106

HSP 2 Score: 23.483 bits (49), Expect = 2.626e-17
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  128 GQILGPKGLMPNPKVGTVTMDVAKA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_FRATO (50S ribosomal protein L1 OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rplA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.626e-17
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            SKR  EI      +K+Y +  A  LL+++SS KF E+ +    L +DP+ +DQ +R    LP GTGK+V+VAV A+G   D AK A A++VG +DL +++K+
Sbjct:    6 SKRMKEISAKINAEKKYPVSEAFDLLREVSSVKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEVKK 107

HSP 2 Score: 23.483 bits (49), Expect = 2.626e-17
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  129 GQILGPKGLMPNPKVGTVTMDVAKA 153
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_FRATN (50S ribosomal protein L1 OS=Francisella tularensis subsp. novicida (strain U112) GN=rplA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.626e-17
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            SKR  EI      +K+Y +  A  LL+++SS KF E+ +    L +DP+ +DQ +R    LP GTGK+V+VAV A+G   D AK A A++VG +DL +++K+
Sbjct:    5 SKRMKEISAKINAEKKYPVSEAFDLLREVSSVKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEVKK 106

HSP 2 Score: 23.483 bits (49), Expect = 2.626e-17
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  128 GQILGPKGLMPNPKVGTVTMDVAKA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_FRATM (50S ribosomal protein L1 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rplA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.626e-17
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            SKR  EI      +K+Y +  A  LL+++SS KF E+ +    L +DP+ +DQ +R    LP GTGK+V+VAV A+G   D AK A A++VG +DL +++K+
Sbjct:    5 SKRMKEISAKINAEKKYPVSEAFDLLREVSSVKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEVKK 106

HSP 2 Score: 23.483 bits (49), Expect = 2.626e-17
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  128 GQILGPKGLMPNPKVGTVTMDVAKA 152
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BURCA2.359e-1737.2750S ribosomal protein L1 OS=Burkholderia cenocepac... [more]
RL1_BARQU2.359e-1735.7650S ribosomal protein L1 OS=Bartonella quintana GN... [more]
RL1_ANOFW2.359e-1737.6550S ribosomal protein L1 OS=Anoxybacillus flavithe... [more]
RL1_RHOE42.624e-1747.0650S ribosomal protein L1 OS=Rhodococcus erythropol... [more]
RL1_METS42.625e-1744.9050S ribosomal protein L1 OS=Methylobacterium sp. (... [more]
RL1_FRATW2.626e-1742.1650S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_FRATT2.626e-1742.1650S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_FRATO2.626e-1742.1650S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_FRATN2.626e-1742.1650S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_FRATM2.626e-1742.1650S ribosomal protein L1 OS=Francisella tularensis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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