DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CAMHC (50S ribosomal protein L1 OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.283e-22
Identity = 51/102 (50.00%), Postives = 71/102 (69.61%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            SKRF E+    +  K Y++  A+  +K ++S KF ET E   +LN+DPKY DQ +R +V LP GTGK V+VAV A+  K DEAKNA AD+VG ++LIE+I++
Sbjct:    5 SKRFNELLKKVDDSKIYNINEAVETVKTLASAKFDETVEISLKLNVDPKYADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSEELIEEIQK 106          

HSP 2 Score: 20.4014 bits (41), Expect = 9.283e-22
Identity = 9/25 (36.00%), Postives = 14/25 (56.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    G++PN K  T T ++  A
Sbjct:  128 GRILGPKGIMPNPKTDTVTMDITNA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_CYAME (50S ribosomal protein L1, chloroplastic OS=Cyanidioschyzon merolae GN=rpl1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.209e-21
Identity = 68/172 (39.53%), Postives = 96/172 (55.81%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            RSKR+  + +L E K  Y  + A+ LLK++++ KF ETAEAH RLN+DPKY DQQ+RATV LP GTGK++++AV  +     E     ADLVG DDL  QI + I      +   + + T+         K L PR     PK G V        + F+R +++YR +  G+
Sbjct:    3 RSKRYQSLCSLIEPKL-YSPQEALKLLKKLATAKFVETAEAHIRLNLDPKYTDQQIRATVVLPHGTGKAIRIAVITKQSSHIEG----ADLVGSDDLCAQIAQSIINFDCLIATPDMMPTL-----AKLGKILGPRGLMPSPKSGTVTTNVAEAIQAFRRGQIEYRTDKTGI 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROMT (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL2A) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.062e-21
Identity = 67/171 (39.18%), Postives = 95/171 (55.56%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   + +  E ++ Y    AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+ +++AV  +GEK +EA  A ADL G +DL++ I +      + N    I+     PK     + L PR     PK G V        K+FK  K+++R +  G+
Sbjct:    5 SKRMTTLLSKVE-ERSYSPIEAIKLVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVDSINK-----GEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEGAIKEFKAGKLEFRADKAGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROM1 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL1A) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.062e-21
Identity = 67/171 (39.18%), Postives = 95/171 (55.56%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   + +  E ++ Y    AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+ +++AV  +GEK +EA  A ADL G +DL++ I +      + N    I+     PK     + L PR     PK G V        K+FK  K+++R +  G+
Sbjct:    5 SKRMTTLLSKVE-ERSYSPIEAIKLVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVDSINK-----GEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEGAIKEFKAGKLEFRADKAGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNPW (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH7803) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.693e-21
Identity = 70/171 (40.94%), Postives = 96/171 (56.14%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   + N  E ++ Y+   AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG++V++AV  +GEK  EAK A A+L G +DL+E I +   G    + L  I      PK     + L PR     PK G V         +FK  K+++R +  G+
Sbjct:    5 SKRLASLVNKIE-ERAYEPLEAIKLVKENATAKFDETVEAHARLGIDPKYTDQQLRTTVALPHGTGQTVRIAVITRGEKVAEAKAAGAELAGDEDLVETISK---GEMDFDLL--IATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAINEFKAGKLEFRADRTGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_GLOVI (50S ribosomal protein L1 OS=Gloeobacter violaceus GN=rplA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.693e-21
Identity = 64/167 (38.32%), Postives = 95/167 (56.89%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   ++   + +  Y  + A+ LLKQ ++ KF ETAE H RL I+PKY DQQ+R+TV LP+GTGK++++AV A+GEK  EA+ A AD+ G ++LIE+I+              I   +     K L PR     PK G V        ++FK  K+++R +  G+
Sbjct:    5 SKRLKALREQVDRQTIYAPQKALELLKQTANAKFDETAETHIRLGINPKYADQQVRSTVVLPRGTGKAIRIAVLAKGEKVREAEKAGADIAGSEELIERIQGGFMEFDLMIATPDIMP-QVARLGKLLGPRGLMPSPKGGTVTMDLVGAIREFKAGKLEFRADRTGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_NITSB (50S ribosomal protein L1 OS=Nitratiruptor sp. (strain SB155-2) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.458e-21
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            +  SKR+ ++    E  K Y +  A+  +K++ S KF ET E   RL +DP++ DQ +R +V LP GTGK+V+VAV A+G K DEAK   AD+VG +DL+EQI+
Sbjct:    3 KKHSKRYQQLLEKIEKGKIYSIDEAVKKVKELKSAKFDETVELALRLGVDPRHADQMVRGSVVLPHGTGKTVRVAVFAKGAKADEAKECGADIVGAEDLVEQIQ 106          

HSP 2 Score: 24.6386 bits (52), Expect = 3.458e-21
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ QA
Sbjct:  129 GRILGPKGLMPNPKTGTVTMDVCQA 153          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNSC (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9605) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.517e-21
Identity = 71/171 (41.52%), Postives = 95/171 (55.56%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   +    E +    L+ AI+L+K  ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+SV++AV  +GEK  EAK A A+L G +DL+E I +   G    + L  I      PK     + L PR     PK G V        K+FK  K+++R +  G+
Sbjct:    5 SKRLASLAGKIEDRAYAPLE-AIALVKDNANAKFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQSVRIAVVTRGEKVAEAKAAGAELAGEEDLVESISK---GEMDFDLL--IATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEAAIKEFKAGKLEFRADRTGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SULDN (50S ribosomal protein L1 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.517e-21
Identity = 63/165 (38.18%), Postives = 89/165 (53.94%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            SKR+ ++    +  K Y +  A  L+K + S KF ET E  F LN+DP++ DQ +R  + LP GTGK+V+VAV A+G K DEAK A AD+VG DDL++QIK  I      +   +C+  +         + L P+     PK G V P      K  K  +V +R
Sbjct:    2 SKRYKQLTEKIDVTKAYSVDEASLLVKNLVSAKFDETVEVAFNLNVDPRHADQMIRGAIVLPHGTGKTVRVAVFAKGAKADEAKAAGADIVGTDDLVQQIKDGIFNFDIVVAAPDCMGLVG-----QIGRILGPKGMMPNPKTGTVTPDVATAVKNVKGGQVNFR 161          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_FERNB (50S ribosomal protein L1 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.517e-21
Identity = 64/166 (38.55%), Postives = 92/166 (55.42%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-----IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            SKR+ EI+ L + +K Y L  A+ LLK+ ++ KF ET E H + NID + ++Q +R+T+SLP GTGKSV+V V A+GEK +EAK A AD VG ++L ++I           +   + +  I         K L PR     PK G V         +FK+ KV+ R
Sbjct:    5 SKRYNEIRKLVDSEKAYTLDEAVELLKKTATAKFDETVEFHIKTNIDYRKSEQNIRSTISLPHGTGKSVRVLVFAKGEKAEEAKQAGADYVGAEELADKIANEGFVDFDVAIATPDMMKVIG-----KLGKVLGPRGLMPNPKTGTVTEDIAAAVSEFKKGKVEVR 165          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CAMHC9.283e-2250.0050S ribosomal protein L1 OS=Campylobacter hominis ... [more]
RK1_CYAME1.209e-2139.5350S ribosomal protein L1, chloroplastic OS=Cyanidi... [more]
RL1_PROMT2.062e-2139.1850S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM12.062e-2139.1850S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_SYNPW2.693e-2140.9450S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_GLOVI2.693e-2138.3250S ribosomal protein L1 OS=Gloeobacter violaceus ... [more]
RL1_NITSB3.458e-2146.1550S ribosomal protein L1 OS=Nitratiruptor sp. (str... [more]
RL1_SYNSC3.517e-2141.5250S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SULDN3.517e-2138.1850S ribosomal protein L1 OS=Sulfurimonas denitrifi... [more]
RL1_FERNB3.517e-2138.5550S ribosomal protein L1 OS=Fervidobacterium nodos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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