DY257117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CAMHC (50S ribosomal protein L1 OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rplA PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 9.283e-22 Identity = 51/102 (50.00%), Postives = 71/102 (69.61%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803 SKRF E+ + K Y++ A+ +K ++S KF ET E +LN+DPKY DQ +R +V LP GTGK V+VAV A+ K DEAKNA AD+VG ++LIE+I++ Sbjct: 5 SKRFNELLKKVDDSKIYNINEAVETVKTLASAKFDETVEISLKLNVDPKYADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSEELIEEIQK 106 HSP 2 Score: 20.4014 bits (41), Expect = 9.283e-22 Identity = 9/25 (36.00%), Postives = 14/25 (56.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 G+I G++PN K T T ++ A Sbjct: 128 GRILGPKGIMPNPKTDTVTMDITNA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_CYAME (50S ribosomal protein L1, chloroplastic OS=Cyanidioschyzon merolae GN=rpl1 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.209e-21 Identity = 68/172 (39.53%), Postives = 96/172 (55.81%), Query Frame = 3 Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 RSKR+ + +L E K Y + A+ LLK++++ KF ETAEAH RLN+DPKY DQQ+RATV LP GTGK++++AV + E ADLVG DDL QI + I + + + T+ K L PR PK G V + F+R +++YR + G+ Sbjct: 3 RSKRYQSLCSLIEPKL-YSPQEALKLLKKLATAKFVETAEAHIRLNLDPKYTDQQIRATVVLPHGTGKAIRIAVITKQSSHIEG----ADLVGSDDLCAQIAQSIINFDCLIATPDMMPTL-----AKLGKILGPRGLMPSPKSGTVTTNVAEAIQAFRRGQIEYRTDKTGI 164
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROMT (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL2A) GN=rplA PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.062e-21 Identity = 67/171 (39.18%), Postives = 95/171 (55.56%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR + + E ++ Y AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+ +++AV +GEK +EA A ADL G +DL++ I + + N I+ PK + L PR PK G V K+FK K+++R + G+ Sbjct: 5 SKRMTTLLSKVE-ERSYSPIEAIKLVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVDSINK-----GEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEGAIKEFKAGKLEFRADKAGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROM1 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL1A) GN=rplA PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.062e-21 Identity = 67/171 (39.18%), Postives = 95/171 (55.56%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR + + E ++ Y AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+ +++AV +GEK +EA A ADL G +DL++ I + + N I+ PK + L PR PK G V K+FK K+++R + G+ Sbjct: 5 SKRMTTLLSKVE-ERSYSPIEAIKLVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVDSINK-----GEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEGAIKEFKAGKLEFRADKAGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNPW (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH7803) GN=rplA PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 2.693e-21 Identity = 70/171 (40.94%), Postives = 96/171 (56.14%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR + N E ++ Y+ AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG++V++AV +GEK EAK A A+L G +DL+E I + G + L I PK + L PR PK G V +FK K+++R + G+ Sbjct: 5 SKRLASLVNKIE-ERAYEPLEAIKLVKENATAKFDETVEAHARLGIDPKYTDQQLRTTVALPHGTGQTVRIAVITRGEKVAEAKAAGAELAGDEDLVETISK---GEMDFDLL--IATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAINEFKAGKLEFRADRTGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_GLOVI (50S ribosomal protein L1 OS=Gloeobacter violaceus GN=rplA PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 2.693e-21 Identity = 64/167 (38.32%), Postives = 95/167 (56.89%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR ++ + + Y + A+ LLKQ ++ KF ETAE H RL I+PKY DQQ+R+TV LP+GTGK++++AV A+GEK EA+ A AD+ G ++LIE+I+ I + K L PR PK G V ++FK K+++R + G+ Sbjct: 5 SKRLKALREQVDRQTIYAPQKALELLKQTANAKFDETAETHIRLGINPKYADQQVRSTVVLPRGTGKAIRIAVLAKGEKVREAEKAGADIAGSEELIERIQGGFMEFDLMIATPDIMP-QVARLGKLLGPRGLMPSPKGGTVTMDLVGAIREFKAGKLEFRADRTGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_NITSB (50S ribosomal protein L1 OS=Nitratiruptor sp. (strain SB155-2) GN=rplA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.458e-21 Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 3 Query: 489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 + SKR+ ++ E K Y + A+ +K++ S KF ET E RL +DP++ DQ +R +V LP GTGK+V+VAV A+G K DEAK AD+VG +DL+EQI+ Sbjct: 3 KKHSKRYQQLLEKIEKGKIYSIDEAVKKVKELKSAKFDETVELALRLGVDPRHADQMVRGSVVLPHGTGKTVRVAVFAKGAKADEAKECGADIVGAEDLVEQIQ 106 HSP 2 Score: 24.6386 bits (52), Expect = 3.458e-21 Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 G+I GL+PN K GT T ++ QA Sbjct: 129 GRILGPKGLMPNPKTGTVTMDVCQA 153
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNSC (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9605) GN=rplA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 3.517e-21 Identity = 71/171 (41.52%), Postives = 95/171 (55.56%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR + E + L+ AI+L+K ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+SV++AV +GEK EAK A A+L G +DL+E I + G + L I PK + L PR PK G V K+FK K+++R + G+ Sbjct: 5 SKRLASLAGKIEDRAYAPLE-AIALVKDNANAKFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQSVRIAVVTRGEKVAEAKAAGAELAGEEDLVESISK---GEMDFDLL--IATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEAAIKEFKAGKLEFRADRTGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SULDN (50S ribosomal protein L1 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=rplA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 3.517e-21 Identity = 63/165 (38.18%), Postives = 89/165 (53.94%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 SKR+ ++ + K Y + A L+K + S KF ET E F LN+DP++ DQ +R + LP GTGK+V+VAV A+G K DEAK A AD+VG DDL++QIK I + +C+ + + L P+ PK G V P K K +V +R Sbjct: 2 SKRYKQLTEKIDVTKAYSVDEASLLVKNLVSAKFDETVEVAFNLNVDPRHADQMIRGAIVLPHGTGKTVRVAVFAKGAKADEAKAAGADIVGTDDLVQQIKDGIFNFDIVVAAPDCMGLVG-----QIGRILGPKGMMPNPKTGTVTPDVATAVKNVKGGQVNFR 161
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_FERNB (50S ribosomal protein L1 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 3.517e-21 Identity = 64/166 (38.55%), Postives = 92/166 (55.42%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-----IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 SKR+ EI+ L + +K Y L A+ LLK+ ++ KF ET E H + NID + ++Q +R+T+SLP GTGKSV+V V A+GEK +EAK A AD VG ++L ++I + + + I K L PR PK G V +FK+ KV+ R Sbjct: 5 SKRYNEIRKLVDSEKAYTLDEAVELLKKTATAKFDETVEFHIKTNIDYRKSEQNIRSTISLPHGTGKSVRVLVFAKGEKAEEAKQAGADYVGAEELADKIANEGFVDFDVAIATPDMMKVIG-----KLGKVLGPRGLMPNPKTGTVTEDIAAAVSEFKKGKVEVR 165 The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bpback to top |