DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CORGL (50S ribosomal protein L1 OS=Corynebacterium glutamicum GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.267e-16
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            SK + E     +  + Y    A +L+K+ SS  +  + +   RL +DP+  DQ +R TVSLP GTGK+V+VAV AQGEK  EA+ A AD VG D+L+E+I+
Sbjct:    5 SKAYREAAEKIDAGRIYSPLEAANLVKETSSKNYDASIDVAIRLGVDPRKADQLVRGTVSLPNGTGKTVRVAVFAQGEKATEAEAAGADFVGTDELVEKIQ 105

HSP 2 Score: 23.0978 bits (48), Expect = 1.267e-16
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  890 GLLPNSKAGTGTTNLPQA 943
            GL+PN K GT T ++ +A
Sbjct:  135 GLMPNPKTGTVTNDVAKA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CORGB (50S ribosomal protein L1 OS=Corynebacterium glutamicum (strain R) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.267e-16
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            SK + E     +  + Y    A +L+K+ SS  +  + +   RL +DP+  DQ +R TVSLP GTGK+V+VAV AQGEK  EA+ A AD VG D+L+E+I+
Sbjct:    5 SKAYREAAEKIDAGRIYSPLEAANLVKETSSKNYDASIDVAIRLGVDPRKADQLVRGTVSLPNGTGKTVRVAVFAQGEKATEAEAAGADFVGTDELVEKIQ 105

HSP 2 Score: 23.0978 bits (48), Expect = 1.267e-16
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  890 GLLPNSKAGTGTTNLPQA 943
            GL+PN K GT T ++ +A
Sbjct:  135 GLMPNPKTGTVTNDVAKA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_METEP (50S ribosomal protein L1 OS=Methylobacterium extorquens (strain PA1) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.268e-16
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 3 
Query:  516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            I+  REG    K Y +  AI L+K  +S KF ET E    L +DP++ DQ +R   +LP G+G++V+VAV A+G K D+A+ A AD+VG +DL+E ++
Sbjct:    8 IRAAREGLEPMKLYAIDEAIKLVKSKASAKFDETVEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADDARAAGADIVGAEDLLEIVQ 105

HSP 2 Score: 23.483 bits (49), Expect = 1.268e-16
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    GL+PN K GT T ++  A
Sbjct:  128 GKVLGPRGLMPNPKVGTVTMDVKGA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_METC4 (50S ribosomal protein L1 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.268e-16
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 3 
Query:  516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            I+  REG    K Y +  AI L+K  +S KF ET E    L +DP++ DQ +R   +LP G+G++V+VAV A+G K D+A+ A AD+VG +DL+E ++
Sbjct:    8 IRAAREGLEPMKLYAIDEAIKLVKSKASAKFDETVEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADDARAAGADIVGAEDLLEIVQ 105

HSP 2 Score: 23.483 bits (49), Expect = 1.268e-16
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    GL+PN K GT T ++  A
Sbjct:  128 GKVLGPRGLMPNPKVGTVTMDVKGA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BEII9 (50S ribosomal protein L1 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.268e-16
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 3 
Query:  540 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K Y +  A+ L+K+ ++ KF ET E    L +DPK+ DQ +R  V+LP GTG++++VAV A+G K DEA  A AD+VG +DL+  ++
Sbjct:   19 KLYPVDEAVKLIKERANAKFDETVEIAMNLGVDPKHADQMVRGVVNLPNGTGRTLRVAVFARGAKADEALAAGADIVGAEDLVATVQ 105

HSP 2 Score: 23.483 bits (49), Expect = 1.268e-16
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    GL+PN K GT T ++  A
Sbjct:  128 GKVLGPRGLMPNPKVGTVTMDVAGA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THISH (50S ribosomal protein L1 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.529e-16
Identity = 59/168 (35.12%), Postives = 88/168 (52.38%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   E  K Y    A +LLK++SS KF E+ +    L +DP+ +DQ +R +  LP GTGK+V+VAV  QG   + AK A AD+VG DDL  ++K+    +     + T +  R   +  + L PR     PK+G V        K  K  +V+YR +  G+
Sbjct:    5 TKRMRAIREKIEAGKLYPANEAFALLKEISSVKFAESVDVSVNLGVDPRKSDQVVRGSTVLPNGTGKTVRVAVFTQGANAEAAKAAGADIVGMDDLAAEVKK--GNMDFDVVIATPDAMRVVGQLGQILGPRGLMPNPKVGTVTTDVATAVKNAKGGQVRYRTDKAGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNAS (50S ribosomal protein L1 OS=Syntrophus aciditrophicus (strain SB) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.529e-16
Identity = 58/162 (35.80%), Postives = 82/162 (50.62%), Query Frame = 3 
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            R K +L  +   E  + Y L  A++L+   +  KF ET EA  RL ++P + DQ +R +V LP G GK+V+V V A+GEK  EA +A AD  G D+ IE+IK       +      + G       K L PR     PK+G V        K+ K  KV++R
Sbjct:    4 RGKVYLNARGKVEAGRRYTLSEALALVTDTARAKFDETVEAAVRLGVNPAHADQMVRGSVVLPNGLGKTVRVLVFAKGEKEKEALDAGADYAGSDEFIEKIKSGWLEFDRVIATPDMMG-NVGKLGKILGPRGLMPNPKVGTVTFDVATAVKEVKAGKVEFR 164
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHEPW (50S ribosomal protein L1 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.529e-16
Identity = 55/171 (32.16%), Postives = 86/171 (50.29%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   E  K YD+  A++LLK++++ KF E+ +    L +DP+ +DQ +R    LP GTG+ V+VAV  QG   + A  A A+LVG D+L  Q+K         +   + +  +         + L PR     PK G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRARLIREKVEVTKNYDINEAVALLKELATAKFVESVDVAVNLGVDPRKSDQNVRGATVLPHGTGREVRVAVFTQGANAEAATAAGAELVGMDELAAQVKAGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHOPB (50S ribosomal protein L1 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.529e-16
Identity = 56/159 (35.22%), Postives = 89/159 (55.97%), Query Frame = 3 
Query:  516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            ++  REG   +K Y L  AI ++K+ + +KF ET E    L +DP++ DQ +R  V+LP GTG++++V V A+G K DEA+ A AD+VG +DL+E+++     ++   C+ T +      +  K L PR     PK+G V        K  K   V++R
Sbjct:    7 LKKAREGVDREKLYPLADAIKMVKERAVSKFDETIEIAINLGVDPRHADQMVRGVVTLPNGTGRTLRVGVFARGAKADEARAAGADVVGAEDLVEKVQGGT--IEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDITNAVKGAKGGSVEFR 163
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHIE6 (50S ribosomal protein L1 OS=Rhizobium etli (strain CIAT 652) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.529e-16
Identity = 59/161 (36.65%), Postives = 87/161 (54.04%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            KR  +I    +  K Y L  AI ++K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G K DEAK A AD+VG +DL+E ++     ++   C+ T +      +  K L PR     PK+G V        K  K   V++R
Sbjct:    4 KRTRKINEGVDPTKLYALTQAIGMVKERAVAKFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGAKADEAKAAGADVVGAEDLVEIVQG--GKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFR 162
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CORGL1.267e-1644.5550S ribosomal protein L1 OS=Corynebacterium glutam... [more]
RL1_CORGB1.267e-1644.5550S ribosomal protein L1 OS=Corynebacterium glutam... [more]
RL1_METEP1.268e-1643.8850S ribosomal protein L1 OS=Methylobacterium extor... [more]
RL1_METC41.268e-1643.8850S ribosomal protein L1 OS=Methylobacterium chlor... [more]
RL1_BEII91.268e-1644.8350S ribosomal protein L1 OS=Beijerinckia indica su... [more]
RL1_THISH1.529e-1635.1250S ribosomal protein L1 OS=Thioalkalivibrio sp. (... [more]
RL1_SYNAS1.529e-1635.8050S ribosomal protein L1 OS=Syntrophus aciditrophi... [more]
RL1_SHEPW1.529e-1632.1650S ribosomal protein L1 OS=Shewanella piezotolera... [more]
RL1_RHOPB1.529e-1635.2250S ribosomal protein L1 OS=Rhodopseudomonas palus... [more]
RL1_RHIE61.529e-1636.6550S ribosomal protein L1 OS=Rhizobium etli (strain... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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