DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_DINSH (50S ribosomal protein L1 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.529e-16
Identity = 52/131 (39.69%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  534 GKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLV 923
            GK +  ++ A++L+K  +++KF ET E    L +DP++ DQ +R  VSLP GTGK+V+VAV A+G K +EA+ A AD+VG +DL+E I+     ++   C+ T +      +  K L PR+    PK+G V
Sbjct:   17 GKSDLTVEEAVALIKANATSKFDETVEIAMCLGVDPRHADQMVRGVVSLPNGTGKTVRVAVFARGPKAEEAQAAGADIVGAEDLMETIQS--GKIEFDRCIATPDMMPIVGRLGKILGPRNLMPNPKVGTV 145          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BUCCC (50S ribosomal protein L1 OS=Buchnera aphidicola subsp. Cinara cedri GN=rplA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.529e-16
Identity = 56/161 (34.78%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  528 REGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQI---KRRIP-GLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            ++ KK Y++K AI LLK   S KF E+ +A F LNIDPK ++Q +R +V LP GTG ++K+AV   G+    A+ A AD VG +DL   I   K++I   +     +H +   +  P    L P+     PK G +     +  ++ K+ K+ YR + +G+
Sbjct:   12 KKNKKIYNIKEAIQLLKNKKSAKFIESIDAAFNLNIDPKKSEQNVRGSVLLPHGTGNTIKIAVFTTGKNIKIAQLAGADYVGLEDLANLITNQKKKIDLVIASPETMHIVG--KLGP---ILGPKGIMPNPKFGTITKDIKKAIQEAKKGKINYRNDKNGI 167          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_FRASC (50S ribosomal protein L1 OS=Frankia sp. (strain CcI3) GN=rplA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.647e-16
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            RSK +         +  Y    A+ L +Q S+TK+  T E   RL +DP+  DQ +R TV+LP GTGKS +VAV A GEK  EA  A AD+VG DDL+ +I+
Sbjct:    3 RSKAYRAAAEKINPENFYSPLEAVRLAQQTSTTKYDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKSPRVAVFAAGEKAAEASAAGADIVGSDDLVARIQ 104          

HSP 2 Score: 22.7126 bits (47), Expect = 1.647e-16
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  890 GLLPNSKAGTGTTNLPQA 943
            GL+PN K GT T ++ +A
Sbjct:  134 GLMPNPKTGTVTLDIGKA 151          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHEWM (50S ribosomal protein L1 OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16
Identity = 55/171 (32.16%), Postives = 86/171 (50.29%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   E  K YD+  A++LLK++++ KF E+ +    L +DP+ +DQ +R    LP GTG+ V+VAV  QG   + A  A A+LVG D+L  Q+K         +   + +  +         + L PR     PK G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRARLIREKVEVTKNYDINEAVALLKELATAKFVESVDVAVNLGVDPRKSDQNVRGATVLPHGTGREVRVAVFTQGANAEAATAAGAELVGMDELAAQVKAGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRTDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHESH (50S ribosomal protein L1 OS=Shewanella sediminis (strain HAW-EB3) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16
Identity = 55/171 (32.16%), Postives = 86/171 (50.29%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   E  K YD+  A++LLK++++ KF E+ +    L +DP+ +DQ +R    LP GTG+ V+VAV  QG   + A  A A+LVG D+L  Q+K         +   + +  +         + L PR     PK G V P      K  K  +V+YR + +G+
Sbjct:    5 TKRARLIREKVEVTKNYDINEAVALLKELATAKFVESVDVAVNLGVDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAATAAGAELVGMDELAAQVKAGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRTDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHORT (50S ribosomal protein L1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16
Identity = 55/151 (36.42%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  546 YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            YDL  A+ L+++ ++ KF E+ E    L +DP++ DQ +R  V LP GTGK+++VAV A+G K +EAK A ADLVG D+L   I+       +      + G       K L PR     PKLG V        K  K  +V++R    G+
Sbjct:   21 YDLPQAVHLIRERATAKFDESIEVAMNLGVDPRHADQMVRGVVELPHGTGKTMRVAVFAKGAKAEEAKAAGADLVGADELAADIQNGTIDFDRCIATPDMMG-VVGRLGKVLGPRGLMPNPKLGTVTMDVATAVKAAKAGQVQFRVEKSGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_METNO (50S ribosomal protein L1 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16
Identity = 58/149 (38.93%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKE----------KFLEPRDSCQIPKLGLV 923
            I+  REG    K Y L  A+ L+K+ +  KF ET E    L +DP++ DQ +R   +LP G+G++V+VAV A+G K DEAK A AD+VG +DL+E I+             TIN  RC              K L PR     PK+G V
Sbjct:    8 IRAAREGIDPTKVYSLADAVKLIKERAKAKFDETFEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADEAKAAGADIVGAEDLLETIQG-----------GTINFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTV 145          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_GLUOX (50S ribosomal protein L1 OS=Gluconobacter oxydans GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16
Identity = 59/169 (34.91%), Postives = 87/169 (51.48%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            ++KR    Q   E  K Y L  A++L+K  +  KF ET E    L IDP++ DQ +R  +SLP GTGK+++V V A+G K +EA  A A++VG +DL E+I  +   +    C+ T +      +  K L PR     P+LG V           K  +V+YR    G+
Sbjct:    3 KNKRLTAAQATVERNKPYGLSEAVALVKSNAKAKFDETIEISLNLGIDPRHADQMVRGLISLPNGTGKTLRVGVFARGPKAEEALAAGAEVVGAEDLAEKI--QAGEIDFDRCIATPDMMALVGRLGKILGPRGLMPNPRLGTVTMDVKGAITAAKSGQVEYRAEKAGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_GEOLS (50S ribosomal protein L1 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16
Identity = 56/145 (38.62%), Postives = 78/145 (53.79%), Query Frame = 3
Query:  546 YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            Y LKTA+ ++K  +  KF ET +   +L +DP++ DQ +R  V LP G GK+V+V V A+GEK  EA +A AD VG DDL+ +I+        A     + G       K L PR     PK+G V     R  K+ K  KV++R
Sbjct:   21 YPLKTAVEVVKDTAYAKFDETVDVAVKLGVDPRHADQMVRGAVVLPNGLGKNVRVLVFAKGEKEKEALDAGADYVGADDLVAKIQEGWFEFDTAIATPDMMG-VVGKIGKLLGPRGLMPNPKVGTVTFEVGRAVKESKAGKVEFR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BRASO (50S ribosomal protein L1 OS=Bradyrhizobium sp. (strain ORS278) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16
Identity = 56/159 (35.22%), Postives = 87/159 (54.72%), Query Frame = 3
Query:  516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            ++  REG    K Y L  AI ++K+ +++KF ET E    L +DP++ DQ +R  V LP GTG++++V V A+G K +EAK A AD+VG +DL+E+++     +    C+ T +      +  K L PR     PK+G V        K  K   V++R
Sbjct:    7 LKKAREGVDRTKLYPLADAIKMIKERATSKFDETIEVAINLGVDPRHADQMVRGVVMLPNGTGRTLRVGVFARGAKAEEAKAAGADVVGAEDLVEKVQN--GNIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVTGAVKGAKGGSVEFR 163          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_DINSH1.529e-1639.6950S ribosomal protein L1 OS=Dinoroseobacter shibae... [more]
RL1_BUCCC1.529e-1634.7850S ribosomal protein L1 OS=Buchnera aphidicola su... [more]
RL1_FRASC1.647e-1645.1050S ribosomal protein L1 OS=Frankia sp. (strain Cc... [more]
RL1_SHEWM1.997e-1632.1650S ribosomal protein L1 OS=Shewanella woodyi (str... [more]
RL1_SHESH1.997e-1632.1650S ribosomal protein L1 OS=Shewanella sediminis (... [more]
RL1_RHORT1.997e-1636.4250S ribosomal protein L1 OS=Rhodospirillum rubrum ... [more]
RL1_METNO1.997e-1638.9350S ribosomal protein L1 OS=Methylobacterium nodul... [more]
RL1_GLUOX1.997e-1634.9150S ribosomal protein L1 OS=Gluconobacter oxydans ... [more]
RL1_GEOLS1.997e-1638.6250S ribosomal protein L1 OS=Geobacter lovleyi (str... [more]
RL1_BRASO1.997e-1635.2250S ribosomal protein L1 OS=Bradyrhizobium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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