DY257117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_DINSH (50S ribosomal protein L1 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplA PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.529e-16 Identity = 52/131 (39.69%), Postives = 81/131 (61.83%), Query Frame = 3 Query: 534 GKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLV 923 GK + ++ A++L+K +++KF ET E L +DP++ DQ +R VSLP GTGK+V+VAV A+G K +EA+ A AD+VG +DL+E I+ ++ C+ T + + K L PR+ PK+G V Sbjct: 17 GKSDLTVEEAVALIKANATSKFDETVEIAMCLGVDPRHADQMVRGVVSLPNGTGKTVRVAVFARGPKAEEAQAAGADIVGAEDLMETIQS--GKIEFDRCIATPDMMPIVGRLGKILGPRNLMPNPKVGTV 145
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BUCCC (50S ribosomal protein L1 OS=Buchnera aphidicola subsp. Cinara cedri GN=rplA PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.529e-16 Identity = 56/161 (34.78%), Postives = 88/161 (54.66%), Query Frame = 3 Query: 528 REGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQI---KRRIP-GLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 ++ KK Y++K AI LLK S KF E+ +A F LNIDPK ++Q +R +V LP GTG ++K+AV G+ A+ A AD VG +DL I K++I + +H + + P L P+ PK G + + ++ K+ K+ YR + +G+ Sbjct: 12 KKNKKIYNIKEAIQLLKNKKSAKFIESIDAAFNLNIDPKKSEQNVRGSVLLPHGTGNTIKIAVFTTGKNIKIAQLAGADYVGLEDLANLITNQKKKIDLVIASPETMHIVG--KLGP---ILGPKGIMPNPKFGTITKDIKKAIQEAKKGKINYRNDKNGI 167
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_FRASC (50S ribosomal protein L1 OS=Frankia sp. (strain CcI3) GN=rplA PE=3 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.647e-16 Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 3 Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 RSK + + Y A+ L +Q S+TK+ T E RL +DP+ DQ +R TV+LP GTGKS +VAV A GEK EA A AD+VG DDL+ +I+ Sbjct: 3 RSKAYRAAAEKINPENFYSPLEAVRLAQQTSTTKYDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKSPRVAVFAAGEKAAEASAAGADIVGSDDLVARIQ 104 HSP 2 Score: 22.7126 bits (47), Expect = 1.647e-16 Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2 Query: 890 GLLPNSKAGTGTTNLPQA 943 GL+PN K GT T ++ +A Sbjct: 134 GLMPNPKTGTVTLDIGKA 151
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHEWM (50S ribosomal protein L1 OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rplA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16 Identity = 55/171 (32.16%), Postives = 86/171 (50.29%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 +KR I+ E K YD+ A++LLK++++ KF E+ + L +DP+ +DQ +R LP GTG+ V+VAV QG + A A A+LVG D+L Q+K + + + + + L PR PK G V P K K +V+YR + +G+ Sbjct: 5 TKRARLIREKVEVTKNYDINEAVALLKELATAKFVESVDVAVNLGVDPRKSDQNVRGATVLPHGTGREVRVAVFTQGANAEAATAAGAELVGMDELAAQVKAGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRTDKNGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SHESH (50S ribosomal protein L1 OS=Shewanella sediminis (strain HAW-EB3) GN=rplA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16 Identity = 55/171 (32.16%), Postives = 86/171 (50.29%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 +KR I+ E K YD+ A++LLK++++ KF E+ + L +DP+ +DQ +R LP GTG+ V+VAV QG + A A A+LVG D+L Q+K + + + + + L PR PK G V P K K +V+YR + +G+ Sbjct: 5 TKRARLIREKVEVTKNYDINEAVALLKELATAKFVESVDVAVNLGVDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAATAAGAELVGMDELAAQVKAGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRTDKNGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHORT (50S ribosomal protein L1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16 Identity = 55/151 (36.42%), Postives = 79/151 (52.32%), Query Frame = 3 Query: 546 YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 YDL A+ L+++ ++ KF E+ E L +DP++ DQ +R V LP GTGK+++VAV A+G K +EAK A ADLVG D+L I+ + + G K L PR PKLG V K K +V++R G+ Sbjct: 21 YDLPQAVHLIRERATAKFDESIEVAMNLGVDPRHADQMVRGVVELPHGTGKTMRVAVFAKGAKAEEAKAAGADLVGADELAADIQNGTIDFDRCIATPDMMG-VVGRLGKVLGPRGLMPNPKLGTVTMDVATAVKAAKAGQVQFRVEKSGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_METNO (50S ribosomal protein L1 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16 Identity = 58/149 (38.93%), Postives = 78/149 (52.35%), Query Frame = 3 Query: 516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKE----------KFLEPRDSCQIPKLGLV 923 I+ REG K Y L A+ L+K+ + KF ET E L +DP++ DQ +R +LP G+G++V+VAV A+G K DEAK A AD+VG +DL+E I+ TIN RC K L PR PK+G V Sbjct: 8 IRAAREGIDPTKVYSLADAVKLIKERAKAKFDETFEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADEAKAAGADIVGAEDLLETIQG-----------GTINFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTV 145
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_GLUOX (50S ribosomal protein L1 OS=Gluconobacter oxydans GN=rplA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16 Identity = 59/169 (34.91%), Postives = 87/169 (51.48%), Query Frame = 3 Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 ++KR Q E K Y L A++L+K + KF ET E L IDP++ DQ +R +SLP GTGK+++V V A+G K +EA A A++VG +DL E+I + + C+ T + + K L PR P+LG V K +V+YR G+ Sbjct: 3 KNKRLTAAQATVERNKPYGLSEAVALVKSNAKAKFDETIEISLNLGIDPRHADQMVRGLISLPNGTGKTLRVGVFARGPKAEEALAAGAEVVGAEDLAEKI--QAGEIDFDRCIATPDMMALVGRLGKILGPRGLMPNPRLGTVTMDVKGAITAAKSGQVEYRAEKAGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_GEOLS (50S ribosomal protein L1 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16 Identity = 56/145 (38.62%), Postives = 78/145 (53.79%), Query Frame = 3 Query: 546 YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 Y LKTA+ ++K + KF ET + +L +DP++ DQ +R V LP G GK+V+V V A+GEK EA +A AD VG DDL+ +I+ A + G K L PR PK+G V R K+ K KV++R Sbjct: 21 YPLKTAVEVVKDTAYAKFDETVDVAVKLGVDPRHADQMVRGAVVLPNGLGKNVRVLVFAKGEKEKEALDAGADYVGADDLVAKIQEGWFEFDTAIATPDMMG-VVGKIGKLLGPRGLMPNPKVGTVTFEVGRAVKESKAGKVEFR 164
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BRASO (50S ribosomal protein L1 OS=Bradyrhizobium sp. (strain ORS278) GN=rplA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16 Identity = 56/159 (35.22%), Postives = 87/159 (54.72%), Query Frame = 3 Query: 516 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 ++ REG K Y L AI ++K+ +++KF ET E L +DP++ DQ +R V LP GTG++++V V A+G K +EAK A AD+VG +DL+E+++ + C+ T + + K L PR PK+G V K K V++R Sbjct: 7 LKKAREGVDRTKLYPLADAIKMIKERATSKFDETIEVAINLGVDPRHADQMVRGVVMLPNGTGRTLRVGVFARGAKAEEAKAAGADVVGAEDLVEKVQN--GNIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVTGAVKGAKGGSVEFR 163 The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bpback to top |