DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BACCR (50S ribosomal protein L1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16
Identity = 58/162 (35.80%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            R K+++E   L +    Y    A+ L+K+ ++ KF  T EA FRL +DPK  DQQ+R  V LP GTGK  +V V A+GEK  EA+ A AD VG  D I +I++             + G       + L P+     PK G V     +   + K  KV+YR
Sbjct:    6 RGKKYVEAAKLVDRAAAYSATEAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDTDYIGKIQQGWFDFDVVVATPDMMG-EVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYR 166          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BACC4 (50S ribosomal protein L1 OS=Bacillus cereus (strain B4264) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16
Identity = 58/162 (35.80%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            R K+++E   L +    Y    A+ L+K+ ++ KF  T EA FRL +DPK  DQQ+R  V LP GTGK  +V V A+GEK  EA+ A AD VG  D I +I++             + G       + L P+     PK G V     +   + K  KV+YR
Sbjct:    4 RGKKYVEAAKLVDRAAAYSATEAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDTDYIGKIQQGWFDFDVVVATPDMMG-EVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BACC2 (50S ribosomal protein L1 OS=Bacillus cereus (strain G9842) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16
Identity = 58/162 (35.80%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            R K+++E   L +    Y    A+ L+K+ ++ KF  T EA FRL +DPK  DQQ+R  V LP GTGK  +V V A+GEK  EA+ A AD VG  D I +I++             + G       + L P+     PK G V     +   + K  KV+YR
Sbjct:    4 RGKKYVEAAKLVDRAAAYSATEAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDTDYIGKIQQGWFDFDVVVATPDMMG-EVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_AZOSB (50S ribosomal protein L1 OS=Azoarcus sp. (strain BH72) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16
Identity = 59/168 (35.12%), Postives = 93/168 (55.36%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   ++   +  + Y +  A++L+K+ ++ KF E+ +    L +D + +DQ +R +V LP GTGK+V+VAV AQG+K + A+ A AD+VG DDL EQ+K     +    C+ T +  R   +  + L PR     PK+G V        K  K  +V+YR +  GL
Sbjct:    5 SKRVQALRAKVDRNRIYPVAEALALVKECATAKFDESIDVAVNLGVDARKSDQVVRGSVVLPAGTGKTVRVAVFAQGDKAEAARAAGADVVGFDDLAEQVKGGT--IDFDLCIATPDAMRVVGQLGQILGPRGLMPNPKVGTVTMDVTTAVKNAKAGQVQYRTDKGGL 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_DEHSB (50S ribosomal protein L1 OS=Dehalococcoides sp. (strain BAV1) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.141e-16
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  492 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            T  K++ +   L +    Y    AI L K+MS+ KF ET E H ++ +DPK   QQLR    LP G GK+V+V V AQGE    A+ A AD+ GGD+LI++I+
Sbjct:    3 THGKKYQDAIKLLDQSAAYAPAEAIDLAKKMSAAKFDETVEMHLKMGLDPKNATQQLRGVAVLPHGLGKTVRVLVFAQGEAEKAAQVAGADVYGGDELIKKIE 105          

HSP 2 Score: 22.3274 bits (46), Expect = 2.141e-16
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGT 919
            GK+    GL+PN K+GT
Sbjct:  128 GKVLGRRGLMPNPKSGT 144          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CLOTE (50S ribosomal protein L1 OS=Clostridium tetani GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.143e-16
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            K + E   L +    Y  + A++L+ + S   F ET +   RL +DP++ DQQ+R  + LP GTGK VKV V A+GEK  EA+ A AD VG ++L+E+I++
Sbjct:    3 KNYAESAKLIDKSTLYSSEEAMNLVVKTSKANFDETIDLAVRLGVDPRHADQQVRGAIILPHGTGKKVKVLVFAKGEKAKEAEAAGADFVGAEELVEKIQK 103          

HSP 2 Score: 23.483 bits (49), Expect = 2.143e-16
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T ++ +A
Sbjct:  126 GRVLGPKGLMPNPKSGTVTFDVAKA 150          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_MYCS2 (50S ribosomal protein L1 OS=Mycobacterium smegmatis GN=rplA PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.608e-16
Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            SK + E     +  K Y    A  L K+ SS K   T E   RL +DP+  DQ +R TV+LP GTGK+ +VAV A GEK ++A+ A AD+VG DDLIE+I+        A         +     + L PR     PK G V P   +  +  K  K+ +R
Sbjct:    5 SKAYREAAEKVDRTKLYTPLEAAKLAKETSSKKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGEKAEQAQAAGADIVGSDDLIEKIQGGFLDFDAAIATPDQMA-KVGRIARVLGPRGLMPNPKTGTVTPDVAKAVQDIKGGKINFR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_KINRD (50S ribosomal protein L1 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.608e-16
Identity = 54/166 (32.53%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*H 992
            RSK +       + ++ Y    A+ L ++ S+ K+  T E  FRL +DP+  DQ +R TV+LP GTGK+ +V V A G++  +A+ A AD+VGGD+LI+++ +       A     + G +     K L PR     PK G V     +   + K  K+++R + H
Sbjct:    3 RSKSYRAAAEKIDFEELYAPLDAVKLARETSTVKYDATVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFAVGDRAAQAEAAGADIVGGDELIDEVAKGRLDFDAAVATPDLMG-KVGRLGKVLGPRGLMPNPKTGTVTMDVAKAVSEIKGGKIEFRTDKH 167          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BART1 (50S ribosomal protein L1 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.608e-16
Identity = 56/162 (34.57%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            +KR   I+   +  + Y L  A+S++K+ +  KF ET E    L +DP++ DQ +R    LP GTG++++VAV A+G+K +EAK A AD+VG +DL E I   +  +    C+ T +      +  K L PR     PK+G V        K  K   V++R
Sbjct:    5 AKRIKNIRKDVDFNQLYALNDAVSMVKERAVAKFDETIEISMNLGVDPRHADQMVRGVAHLPNGTGRNIRVAVFARGDKAEEAKAAGADIVGAEDLFESINGGV--IDFDRCIATPDMMPLVGRLGKILGPRSLMPNPKVGTVTLDVAGAVKASKGGAVEFR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BACHK (50S ribosomal protein L1 OS=Bacillus thuringiensis subsp. konkukian GN=rplA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.608e-16
Identity = 58/162 (35.80%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            R K+++E   L +    Y    A+ L+K+ ++ KF  T EA FRL +DPK  DQQ+R  V LP GTGK  +V V A+GEK  EA+ A AD VG  D I +I++             + G       + L P+     PK G V     +   + K  KV+YR
Sbjct:    4 RGKKYVEAAKLVDRAAAYSATEAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDADYIGKIQQGWFDFDVVVATPDMMG-EVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYR 164          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BACCR1.997e-1635.8050S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_BACC41.997e-1635.8050S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_BACC21.997e-1635.8050S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_AZOSB1.997e-1635.1250S ribosomal protein L1 OS=Azoarcus sp. (strain B... [more]
RL1_DEHSB2.141e-1643.6950S ribosomal protein L1 OS=Dehalococcoides sp. (s... [more]
RL1_CLOTE2.143e-1641.5850S ribosomal protein L1 OS=Clostridium tetani GN=... [more]
RL1_MYCS22.608e-1636.6550S ribosomal protein L1 OS=Mycobacterium smegmati... [more]
RL1_KINRD2.608e-1632.5350S ribosomal protein L1 OS=Kineococcus radiotoler... [more]
RL1_BART12.608e-1634.5750S ribosomal protein L1 OS=Bartonella tribocorum ... [more]
RL1_BACHK2.608e-1635.8050S ribosomal protein L1 OS=Bacillus thuringiensis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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