DY257117
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ORITI (50S ribosomal protein L1 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.778e-16 Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 3
Query: 537 KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
+K YD++ A S++K++S KF ET + +L ++P +++Q +R ++P GTGK+VKVAV Q EK DE K AD+VG D+IE IK
Sbjct: 30 QKCYDVREACSIIKEISFAKFNETVDIAIKLGVNPNHSNQVVRGVAAMPSGTGKTVKVAVICQEEKLDEFKTTGADIVGSLDIIEAIK 117 HSP 2 Score: 21.1718 bits (43), Expect = 2.778e-16 Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 2
Query: 890 GLLPNSKAGTGTTNL 934
GL+PN K GT T ++
Sbjct: 147 GLMPNPKLGTVTNDV 161
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_DEHSC (50S ribosomal protein L1 OS=Dehalococcoides sp. (strain CBDB1) GN=rplA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.783e-16 Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 3
Query: 492 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
T K++ + L + Y AI L K+MS+ KF ET E H ++ +DPK QQLR LP G GK+V+V V AQGE A+ A AD+ GGD+LI++I+
Sbjct: 3 THGKKYQDAIKLLDQSVAYAPAEAIDLAKKMSAAKFDETVEMHLKMGLDPKNATQQLRGVAVLPHGLGKTVRVLVFAQGEAEKAAQVAGADVYGGDELIKKIE 105 HSP 2 Score: 22.3274 bits (46), Expect = 2.783e-16 Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 2
Query: 869 GKIP*TTGLLPNSKAGT 919
GK+ GL+PN K+GT
Sbjct: 128 GKVLGRRGLMPNPKSGT 144
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHOSR (50S ribosomal protein L1 OS=Rhodococcus sp. (strain RHA1) GN=rplA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.783e-16 Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 3
Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
RSK +L + K Y A L K+ SS+K T E RL +DP+ DQ +R TV+LP GTGK+ +V V A GEK EA+ A AD VG +DLIE+I+
Sbjct: 4 RSKAYLAAAEKIDFDKLYSPLQAAKLAKETSSSKMDATVEVAVRLGVDPRKADQMVRGTVNLPHGTGKTARVIVFAVGEKAAEAEAAGADAVGAEDLIERIQ 105 HSP 2 Score: 23.0978 bits (48), Expect = 2.783e-16 Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query: 890 GLLPNSKAGTGTTNLPQA 943
GL+PN K GT T ++ +A
Sbjct: 135 GLMPNPKTGTVTADVTKA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RHOOB (50S ribosomal protein L1 OS=Rhodococcus opacus (strain B4) GN=rplA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.783e-16 Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 3
Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
RSK +L + K Y A L K+ SS+K T E RL +DP+ DQ +R TV+LP GTGK+ +V V A GEK EA+ A AD VG +DLIE+I+
Sbjct: 4 RSKAYLAAAEKVDFDKLYSPLQAAKLAKETSSSKMDATVEVAVRLGVDPRKADQMVRGTVNLPHGTGKTARVIVFAVGEKAAEAEAAGADAVGAEDLIERIQ 105 HSP 2 Score: 23.0978 bits (48), Expect = 2.783e-16 Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query: 890 GLLPNSKAGTGTTNLPQA 943
GL+PN K GT T ++ +A
Sbjct: 135 GLMPNPKTGTVTADVTKA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_RICCK (50S ribosomal protein L1 OS=Rickettsia canadensis (strain McKiel) GN=rplA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 3.406e-16 Identity = 60/166 (36.14%), Postives = 87/166 (52.41%), Query Frame = 3
Query: 513 EIQNLREGKKE---YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RC-PPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
+I+ RE K Y+L A+ LK S KF T E +L IDP+++DQ +R V+LP GTGK+V+VAV + E+ +EAK+A ADLVG +I++IK + C+ T + + L P+ PKLG V K K +V+YR G+
Sbjct: 16 KIREAREKVKSDTLYNLTNAVERLKSASYVKFDPTLEIVMKLGIDPRHSDQMIRGVVNLPAGTGKTVRVAVICKAERVEEAKSAGADLVGSTSIIDEIK--AGKINFDVCIATPDMMAAIGSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAEKAGI 179
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PELTS (50S ribosomal protein L1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 3.406e-16 Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = 3
Query: 546 YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
YD A LLK+++ KF ET E RL +DP++ DQQ+R V LP GTGK+ V V A+G+K EA+ A AD VG +D++ +I++ G A + G + L PR PK G V R K+ K K++YR + G+
Sbjct: 21 YDPAEAFELLKKVAPAKFDETVEVAVRLGVDPRHADQQVRGAVVLPHGTGKTRTVLVFAKGDKAREAEEAGADFVGAEDMVARIQQEGWLGFDVAIATPDMMG-MVGKLGRILGPRGLMPNPKTGTVTFDIARAVKEVKAGKIEYRVDKAGI 171
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PEDPA (50S ribosomal protein L1 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 3.406e-16 Identity = 59/167 (35.33%), Postives = 83/167 (49.70%), Query Frame = 3
Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HG 995
+ K+F + E K Y K A+ L+K++ KF T E ++LN+D K DQQLR V LP GTGK V V A+G K + AK A AD+VG DDL+++I+ A + G + + L P++ PK G V + K KV YR + G
Sbjct: 4 KGKKFQDAAKQVEALKAYAPKEALELVKKIDFAKFDATVETVYKLNVDTKQADQQLRGAVVLPNGTGKEQTVIVFAKGAKAEAAKAAGADVVGDDDLVQRIQDGWLDFDVAIATPDMMG-QVGRLGRVLGPKNLMPNPKTGTVTMDVEKAVADSKSGKVTYRTDRDG 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_GEOSF (50S ribosomal protein L1 OS=Geobacter sp. (strain FRC-32) GN=rplA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 3.406e-16 Identity = 57/161 (35.40%), Postives = 81/161 (50.31%), Query Frame = 3
Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
SK+ + + K Y L + L++ + KFTET + RL +DP++ DQ +R V LP G GK V+V V A+GEK EA++A AD VG DDL+ +I+ A + G K L PR PK+G V R + K KV++R
Sbjct: 4 SKKLKDALAKVDRSKSYTLNDGLELVRSSAYAKFTETVDVAVRLGVDPRHADQMVRGAVVLPNGLGKEVRVLVFAKGEKEKEARDAGADFVGADDLVAKIQEGWFEFDTAIATPDMMG-VVGKIGKLLGPRGLMPNPKVGTVTFDVGRAVNESKSGKVEFR 163
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ORITB (50S ribosomal protein L1 OS=Orientia tsutsugamushi (strain Boryong) GN=rplA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 3.613e-16 Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 3
Query: 537 KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
+K YD++ A S++K++S KF ET + +L ++P ++ Q +R ++P GTGK+VKVAV Q EK DE K AD+VG D+IE IK
Sbjct: 29 QKCYDVREACSIIKEISFAKFNETVDIAIKLGVNPSHSSQVVRGVAAMPSGTGKTVKVAVICQEEKLDEFKTTGADIVGSLDIIEAIK 116 HSP 2 Score: 21.1718 bits (43), Expect = 3.613e-16 Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 2
Query: 890 GLLPNSKAGTGTTNL 934
GL+PN K GT T ++
Sbjct: 146 GLMPNPKLGTVTNDV 160
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_DEHE1 (50S ribosomal protein L1 OS=Dehalococcoides ethenogenes (strain 195) GN=rplA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 3.617e-16 Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 3
Query: 492 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
TR K++ + L + Y AI + K+M++ KF ET E H ++ +DPK QQLR LP G GK+V+V V AQGE A+ A AD+ GGD+LI++++
Sbjct: 3 TRGKKYQDAIKLLDQSLAYAPAEAIDVAKKMAAAKFDETVEMHLKMGLDPKNATQQLRGVAVLPHGLGKTVRVLVFAQGEAEKAAQAAGADVYGGDELIKKVE 105 HSP 2 Score: 22.3274 bits (46), Expect = 3.617e-16 Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 2
Query: 869 GKIP*TTGLLPNSKAGT 919
GK+ GL+PN K+GT
Sbjct: 128 GKVLGRRGLMPNPKSGT 144 The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bpback to top |