DY257117
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_MYCTU (50S ribosomal protein L1 OS=Mycobacterium tuberculosis GN=rplA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.619e-16 Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query: 561 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
A L K+ SSTK T E RL +DP+ DQ +R TV+LP GTGK+ +VAV A GEK D A A AD+VG DDLIE+I+
Sbjct: 26 AAKLAKETSSTKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGEKADAAVAAGADVVGSDDLIERIQ 105 HSP 2 Score: 23.0978 bits (48), Expect = 3.619e-16 Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query: 890 GLLPNSKAGTGTTNLPQA 943
GL+PN K GT T ++ +A
Sbjct: 135 GLMPNPKTGTVTADVAKA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_MYCTA (50S ribosomal protein L1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rplA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.619e-16 Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query: 561 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
A L K+ SSTK T E RL +DP+ DQ +R TV+LP GTGK+ +VAV A GEK D A A AD+VG DDLIE+I+
Sbjct: 26 AAKLAKETSSTKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGEKADAAVAAGADVVGSDDLIERIQ 105 HSP 2 Score: 23.0978 bits (48), Expect = 3.619e-16 Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query: 890 GLLPNSKAGTGTTNLPQA 943
GL+PN K GT T ++ +A
Sbjct: 135 GLMPNPKTGTVTADVAKA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_MYCBT (50S ribosomal protein L1 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rplA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.619e-16 Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query: 561 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
A L K+ SSTK T E RL +DP+ DQ +R TV+LP GTGK+ +VAV A GEK D A A AD+VG DDLIE+I+
Sbjct: 26 AAKLAKETSSTKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGEKADAAVAAGADVVGSDDLIERIQ 105 HSP 2 Score: 23.0978 bits (48), Expect = 3.619e-16 Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query: 890 GLLPNSKAGTGTTNLPQA 943
GL+PN K GT T ++ +A
Sbjct: 135 GLMPNPKTGTVTADVAKA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_MYCBP (50S ribosomal protein L1 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rplA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.619e-16 Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query: 561 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
A L K+ SSTK T E RL +DP+ DQ +R TV+LP GTGK+ +VAV A GEK D A A AD+VG DDLIE+I+
Sbjct: 26 AAKLAKETSSTKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGEKADAAVAAGADVVGSDDLIERIQ 105 HSP 2 Score: 23.0978 bits (48), Expect = 3.619e-16 Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query: 890 GLLPNSKAGTGTTNLPQA 943
GL+PN K GT T ++ +A
Sbjct: 135 GLMPNPKTGTVTADVAKA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_MYCBO (50S ribosomal protein L1 OS=Mycobacterium bovis GN=rplA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.619e-16 Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query: 561 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
A L K+ SSTK T E RL +DP+ DQ +R TV+LP GTGK+ +VAV A GEK D A A AD+VG DDLIE+I+
Sbjct: 26 AAKLAKETSSTKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGEKADAAVAAGADVVGSDDLIERIQ 105 HSP 2 Score: 23.0978 bits (48), Expect = 3.619e-16 Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query: 890 GLLPNSKAGTGTTNLPQA 943
GL+PN K GT T ++ +A
Sbjct: 135 GLMPNPKTGTVTADVAKA 152
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_STRGR (50S ribosomal protein L1 OS=Streptomyces griseus GN=rplA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 4.449e-16 Identity = 55/166 (33.13%), Postives = 83/166 (50.00%), Query Frame = 3
Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*H 992
RSK + ++ Y A+ L K+ SSTKF T E F L +DP+ DQ +R TV+LP GTGK+ +V V A G++ A+ A AD+VG D+LI+++ + + G + + L PR PK G V P + K K+++R + H
Sbjct: 3 RSKNLRAADAKVDRERNYAPLEAVRLAKETSSTKFDGTVEVAFALGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAAAAEAAGADIVGADELIDEVAKGRLDFDAVVATPDLMG-KVGRLGRVLGPRGLMPNPKTGTVTPDVVKAVNDIKGGKIEFRVDKH 167
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_STRGG (50S ribosomal protein L1 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 4.449e-16 Identity = 55/166 (33.13%), Postives = 83/166 (50.00%), Query Frame = 3
Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*H 992
RSK + ++ Y A+ L K+ SSTKF T E F L +DP+ DQ +R TV+LP GTGK+ +V V A G++ A+ A AD+VG D+LI+++ + + G + + L PR PK G V P + K K+++R + H
Sbjct: 3 RSKNLRAADAKVDRERNYAPLEAVRLAKETSSTKFDGTVEVAFALGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAAAAEAAGADIVGADELIDEVAKGRLDFDAVVATPDLMG-KVGRLGRVLGPRGLMPNPKTGTVTPDVVKAVNDIKGGKIEFRVDKH 167
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_STRCO (50S ribosomal protein L1 OS=Streptomyces coelicolor GN=rplA PE=3 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 4.449e-16 Identity = 55/166 (33.13%), Postives = 83/166 (50.00%), Query Frame = 3
Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*H 992
RSK + K Y A+ L K+ S++KF T E FRL +DP+ DQ +R TV+LP GTGK+ +V V A G++ + A A AD+VG D+LI+++ + + G + + L PR PK G V P + K K+++R + H
Sbjct: 4 RSKSLRAADAKIDRDKLYAPLEAVRLAKETSTSKFDGTVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAEAATAAGADIVGSDELIDEVSKGRLDFDAVVATPDLMG-KVGRLGRVLGPRGLMPNPKTGTVTPDVAKAVNDIKGGKIEFRVDKH 168
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_STAS1 (50S ribosomal protein L1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 4.449e-16 Identity = 56/168 (33.33%), Postives = 86/168 (51.19%), Query Frame = 3
Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
+SKR+ E + + K Y+++ A+ L K+ + F + E FRL ID + NDQQ+R V LP GTGKS +V V A+G+K EA+ A AD VG + +E+I++ + G + L P+ PK G V + ++ K KV+YR G+
Sbjct: 4 KSKRYQEAASKIDRLKHYNVEEAVELAKETNIANFDASVEVAFRLGIDTRKNDQQIRGAVVLPNGTGKSQRVLVFAKGDKAAEAEAAGADFVGEGEYVEKIQQGWFDFDVVVATPDMMG-EVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKSGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_OLICO (50S ribosomal protein L1 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 4.449e-16 Identity = 57/155 (36.77%), Postives = 86/155 (55.48%), Query Frame = 3
Query: 528 REG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
REG +K Y + AI L+K+ ++ KF ET E L +DP++ DQ +R V+LP GTG++++V V A+G K DEAK A AD+VG +DL+E ++ ++ C+ T + + K L PR PK+G V K K V++R
Sbjct: 11 REGIDREKLYAIADAIKLVKERATAKFDETIEVAINLGVDPRHADQMVRGVVTLPNGTGRTLRVGVFARGAKADEAKAAGADVVGAEDLVEIVQG--GKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFR 163 The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bpback to top |