DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROM9 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.593e-21
Identity = 64/150 (42.67%), Postives = 87/150 (58.00%), Query Frame = 3 
Query:  561 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            A+S++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+K+AV   GE   +AK+A ADL G +DL+E I +   G    + L  I      PK     + L PR     PK G V        K+FK  K+++R +  G+
Sbjct:   25 ALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVSKAKSAGADLFGEEDLVESINK---GNMDFDLL--IATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRADKAGI 169
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROM2 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.999e-21
Identity = 68/171 (39.77%), Postives = 96/171 (56.14%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   +    E +    L+ A+S++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+++AV   GE   +AK+A ADL G +DL+E I +   G  + + L  I      PK     + L PR     PK G V        K+FK  K+++R +  G+
Sbjct:    5 SKRMASLSTKIEDRIYAPLE-ALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIRIAVITSGENVSKAKSAGADLFGEEDLVESINK---GNMEFDLL--IATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIGNAIKEFKAGKLEFRADKAGI 169
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROM0 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.999e-21
Identity = 64/150 (42.67%), Postives = 87/150 (58.00%), Query Frame = 3 
Query:  561 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            A+S++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+K+AV   GE   +AK A ADL G +DL+E I +   G  + + L  I      PK     + L PR     PK G V        K+FK  K+++R +  G+
Sbjct:   25 ALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVSKAKAAGADLFGEEDLVESINK---GNMEFDLL--IATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRADKAGI 169
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_DEIRA (50S ribosomal protein L1 OS=Deinococcus radiodurans GN=rplA PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.954e-21
Identity = 47/99 (47.47%), Postives = 70/99 (70.71%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQI 797
            KR+  ++   +  K+Y +  A +L+K++++ KF ET E HFRL IDP+ +DQ +R TV+LP GTG+SV+VAV  +GE    A+ A AD+VG D+LIE+I
Sbjct:    6 KRYRALEGKVDRNKQYSIDEAAALVKELATAKFDETVEVHFRLGIDPRKSDQNVRGTVALPHGTGRSVRVAVITKGENVQAAEAAGADVVGSDELIERI 104

HSP 2 Score: 21.1718 bits (43), Expect = 6.954e-21
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2 
Query:  890 GLLPNSKAGT 919
            GLLPN K+GT
Sbjct:  136 GLLPNPKSGT 145

HSP 3 Score: 20.4014 bits (41), Expect = 6.954e-21
Identity = 7/19 (36.84%), Postives = 12/19 (63.16%), Query Frame = 1 
Query:  802 GGFLDFNKLIAFTQ*MVNV 858
            GGF+DF+ ++A    M  +
Sbjct:  106 GGFMDFDAVVATPDMMAQI 124
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HELPY (50S ribosomal protein L1 OS=Helicobacter pylori GN=rplA PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.614e-21
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K F +IQN     K Y ++  + ++K ++S KF ET E   RL +DP++ DQ +R  V LP GTGK V+VAV A+  K DEAKNA AD+VGGDDL E+IK
Sbjct:   11 KLFSKIQN----DKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIK 106

HSP 2 Score: 24.2534 bits (51), Expect = 7.614e-21
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  129 GRILGPKGLMPNPKTGTVTMDIAKA 153
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HELPS (50S ribosomal protein L1 OS=Helicobacter pylori (strain Shi470) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.614e-21
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K F +IQN     K Y ++  + ++K ++S KF ET E   RL +DP++ DQ +R  V LP GTGK V+VAV A+  K DEAKNA AD+VGGDDL E+IK
Sbjct:   11 KLFSKIQN----DKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIK 106

HSP 2 Score: 24.2534 bits (51), Expect = 7.614e-21
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  129 GRILGPKGLMPNPKTGTVTMDIAKA 153
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HELPH (50S ribosomal protein L1 OS=Helicobacter pylori (strain HPAG1) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.614e-21
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K F +IQN     K Y ++  + ++K ++S KF ET E   RL +DP++ DQ +R  V LP GTGK V+VAV A+  K DEAKNA AD+VGGDDL E+IK
Sbjct:   11 KLFSKIQN----DKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIK 106

HSP 2 Score: 24.2534 bits (51), Expect = 7.614e-21
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  129 GRILGPKGLMPNPKTGTVTMDIAKA 153
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HELPG (50S ribosomal protein L1 OS=Helicobacter pylori (strain G27) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.614e-21
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K F +IQN     K Y ++  + ++K ++S KF ET E   RL +DP++ DQ +R  V LP GTGK V+VAV A+  K DEAKNA AD+VGGDDL E+IK
Sbjct:   11 KLFSKIQN----DKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIK 106

HSP 2 Score: 24.2534 bits (51), Expect = 7.614e-21
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  129 GRILGPKGLMPNPKTGTVTMDIAKA 153
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HELP2 (50S ribosomal protein L1 OS=Helicobacter pylori (strain P12) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.614e-21
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 3 
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K F +IQN     K Y ++  + ++K ++S KF ET E   RL +DP++ DQ +R  V LP GTGK V+VAV A+  K DEAKNA AD+VGGDDL E+IK
Sbjct:   11 KLFSKIQN----DKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIK 106

HSP 2 Score: 24.2534 bits (51), Expect = 7.614e-21
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  129 GRILGPKGLMPNPKTGTVTMDIAKA 153
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THENN (50S ribosomal protein L1 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.835e-21
Identity = 63/166 (37.95%), Postives = 90/166 (54.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-----IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            SKR+LE + L +  K YDL  A+ L+K+ ++ KF ET E H +  ID +  DQ +R T+ LP GTGK VKV V A+GEK  EA+ A AD VG +DL+E+I++         +   + +  I         K L PR     PK G V        K+FK+ +++ R
Sbjct:    5 SKRYLEAKKLVDRTKYYDLDEAVELVKKTATAKFDETIELHIQTGIDYRKPDQHIRGTIVLPHGTGKEVKVLVFARGEKAKEAQEAGADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRVIG-----RLGKILGPRGLMPSPKSGTVTNEVAEAVKEFKKGRIEVR 165
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_PROM94.593e-2142.6750S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM25.999e-2139.7750S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM05.999e-2142.6750S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_DEIRA6.954e-2147.4750S ribosomal protein L1 OS=Deinococcus radioduran... [more]
RL1_HELPY7.614e-2151.0050S ribosomal protein L1 OS=Helicobacter pylori GN... [more]
RL1_HELPS7.614e-2151.0050S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RL1_HELPH7.614e-2151.0050S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RL1_HELPG7.614e-2151.0050S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RL1_HELP27.614e-2151.0050S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RL1_THENN7.835e-2137.9550S ribosomal protein L1 OS=Thermotoga neapolitana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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