DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PHYAS (50S ribosomal protein L1 OS=Phytoplasma australiense GN=rplA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.835e-21
Identity = 65/180 (36.11%), Postives = 92/180 (51.11%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-------------IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HG 995
            RSK++L +  + + KK Y L+ AI L KQ   TKF  T E  F LN+DPK  DQ LR  + LP GTGK++K+AV A+GE+   AK A+AD VG +DLIE+I +              +P L +                + L P+     PK G V     +   + K  K++YR + +G
Sbjct:    3 RSKKYLAVSQMFDIKKRYPLQEAIKLTKQSQITKFDATVECAFHLNLDPKKADQNLRGALVLPHGTGKTLKLAVIAKGEQAKIAKEAQADYVGDEDLIEKISKNWFDFDVLVSTPEMMPQLSKLG--------------RLLGPKGLMPNPKTGTVTDNVGQAVSEIKNGKIEYRLDKNG 168          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CAMC1 (50S ribosomal protein L1 OS=Campylobacter concisus (strain 13826) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.835e-21
Identity = 64/166 (38.55%), Postives = 88/166 (53.01%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HG 995
            SKRF E+    E  K Y+L  AI  +K ++S KF ET E   +LN+DP++ DQ +R +V LP GTGK V+VAV A+  K DEAK A AD+VG DDL+E I++ I           + G       + L P+     PK G V     +     K  +V +R +  G
Sbjct:    5 SKRFQELLKKVEQDKIYNLSEAIDTVKTLASAKFNETVEIALKLNVDPRHADQMVRGSVVLPAGTGKVVRVAVIAKDAKADEAKAAGADIVGADDLVEDIQKGIMNFDVLIATPNLMG-LVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVDKQG 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THELT (50S ribosomal protein L1 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.023e-20
Identity = 66/175 (37.71%), Postives = 94/175 (53.71%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRR-----IPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGLCPH 1007
            S+R+ EI+   +  + Y +  AI L+KQ ++ KF ET E H   NID K  +QQ+R+TV+LP GTGK V+V V A+G+K + AKNA AD VGGD+L+E+I           +   + + +I         K L PR     PK G V        K FK  +++ R +  G C H
Sbjct:    5 SRRYQEIRQKVDRTRFYSVDDAIELVKQTATAKFDETVELHLSTNIDTKRPEQQVRSTVTLPHGTGKRVRVLVFAKGDKAEAAKNAGADYVGGDELVEKITNENFTDFDVAIATPDMMRSIG-----KLGKILGPRGLMPSPKSGTVTEDVETAVKAFKMGRIEVRNDKTG-CIH 173          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROM5 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.023e-20
Identity = 68/171 (39.77%), Postives = 95/171 (55.56%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   +    E +    L+ A++++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+K+AV   GE   +AK+A ADL G +DL+E I +   G    + L  I      PK     + L PR     PK G V        K+FK  K+++R +  G+
Sbjct:    5 SKRMTALSTKIEDRTYAPLE-ALAIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVAKAKSAGADLFGEEDLVESINK---GNMDFDLL--IATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTSDIASAIKEFKAGKLEFRADKAGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROMS (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain AS9601) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.336e-20
Identity = 64/150 (42.67%), Postives = 86/150 (57.33%), Query Frame = 3
Query:  561 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            A+S++K+ ++ KF ET EAH RL IDPKY DQQLR TV LP GTG+S+K+AV   GE   +AK A ADL G +DL+E I +   G  + + L  I      PK     + L PR     PK G V        K+FK  K+++R +  G+
Sbjct:   25 ALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVVLPHGTGQSIKIAVITSGENVSKAKAAGADLFGEEDLVESINK---GNMEFDLL--IATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRADKAGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CHLCV (50S ribosomal protein L1 OS=Chlamydophila caviae GN=rplA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.336e-20
Identity = 61/167 (36.53%), Postives = 90/167 (53.89%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGLC 1001
            KR   I    +  K Y L+ AI +LKQ  + +F +T +   +L IDPK +DQQ+R +VSLP GTGK++K+ V A GEK  EA +A AD VG DDL+E+IK        A     +         K L PR+    PK G V     +   + ++ K++++ +  G+C
Sbjct:    6 KRIRGILKSYDFSKSYSLQEAIDILKQCPTVRFDQTVDVSIKLGIDPKKSDQQIRGSVSLPNGTGKTLKILVFAAGEKAKEALDAGADFVGSDDLVERIKGGWVDFDVAVATPDMMR-EVGKLGKVLGPRNLMPTPKAGTVTMDVTKAIAELRKGKIEFKADRAGVC 171          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HELAH (50S ribosomal protein L1 OS=Helicobacter acinonychis (strain Sheeba) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.676e-20
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            K F +IQN     K Y ++  +  +K ++S KF ET E   RL +DP++ DQ +R  V LP GTGK V+VAV A+  K DEAKNA AD+VGGDDL E+IK
Sbjct:   11 KLFSKIQN----DKVYGVEQGVGAVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIK 106          

HSP 2 Score: 24.2534 bits (51), Expect = 1.676e-20
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  129 GRILGPKGLMPNPKTGTVTMDIAKA 153          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNP2 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.745e-20
Identity = 49/88 (55.68%), Postives = 66/88 (75.00%), Query Frame = 3
Query:  540 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKR 803
            + Y+   A++LLK+ ++ KF ETAEAH RL IDPKY DQQLR TV+ PKGTG+SV+VAV   GE+   A+ + ADLVG ++LIE I++
Sbjct:   19 RAYEPLEALTLLKETATAKFDETAEAHIRLGIDPKYTDQQLRTTVAFPKGTGQSVRVAVITSGEQVKVAEESGADLVGSEELIEDIQK 106          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CHLFF (50S ribosomal protein L1 OS=Chlamydophila felis (strain Fe/C-56) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.745e-20
Identity = 60/167 (35.93%), Postives = 90/167 (53.89%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGLC 1001
            KR   I    +  K Y L+ AI +LKQ  + +F +T +   +L IDPK +DQQ+R +VSLP GTGK++++ V A GEK  EA +A AD VG DDL+E+IK        A     +         K L PR+    PK G V     +   + ++ K++++ +  G+C
Sbjct:    6 KRIRSILKSYDFSKSYSLQEAIDILKQCPTVRFDQTVDVSIKLGIDPKKSDQQIRGSVSLPNGTGKTLRILVFAAGEKAKEALDAGADFVGSDDLVEKIKGGWVDFDVAVATPDMMR-EVGKLGKVLGPRNLMPTPKAGTVTTDVVKAIAELRKGKIEFKADRAGVC 171          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CAMC5 (50S ribosomal protein L1 OS=Campylobacter curvus (strain 525.92) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.745e-20
Identity = 62/166 (37.35%), Postives = 90/166 (54.22%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HG 995
            +KRF E+    E  K Y+L  AI+ +K ++S KF ET E   +LN+DP++ DQ +R +V LP GTGK+V+VAV A+  K DEAK A AD+VG D+L+E I++ I           + G       + L P+     PK G V     +     K  +V +R +  G
Sbjct:    5 TKRFQELLKKVEENKIYNLDEAITTIKTLASAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKTVRVAVIAKDAKADEAKAAGADIVGSDELVEDIQKGIMNFDVLIATPNLMG-LVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVDKQG 169          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_PHYAS7.835e-2136.1150S ribosomal protein L1 OS=Phytoplasma australien... [more]
RL1_CAMC17.835e-2138.5550S ribosomal protein L1 OS=Campylobacter concisus... [more]
RL1_THELT1.023e-2037.7150S ribosomal protein L1 OS=Thermotoga lettingae (... [more]
RL1_PROM51.023e-2039.7750S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROMS1.336e-2042.6750S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_CHLCV1.336e-2036.5350S ribosomal protein L1 OS=Chlamydophila caviae G... [more]
RL1_HELAH1.676e-2051.0050S ribosomal protein L1 OS=Helicobacter acinonych... [more]
RL1_SYNP21.745e-2055.6850S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_CHLFF1.745e-2035.9350S ribosomal protein L1 OS=Chlamydophila felis (s... [more]
RL1_CAMC51.745e-2037.3550S ribosomal protein L1 OS=Campylobacter curvus (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
back to top