DY257117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNS3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9311) GN=rplA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.280e-20 Identity = 64/157 (40.76%), Postives = 89/157 (56.69%), Query Frame = 3 Query: 540 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 + Y AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP+GTG++V++AV +GEK EAK A A+L G +DL+E I + + N I PK + L PR PK G V ++FK K+++R + G+ Sbjct: 18 RAYQPLEAIQLVKENATAKFDETMEAHVRLGIDPKYTDQQLRTTVALPQGTGQTVRIAVITRGEKVAEAKAAGAELSGDEDLVEAISK-----GEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLASAIQEFKAGKLEFRADRTGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROMP (50S ribosomal protein L1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.280e-20 Identity = 68/171 (39.77%), Postives = 94/171 (54.97%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 SKR + E + L+ A+ ++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+K+AV GE +AK+A ADL G +DL+E I + G + L I PK + L PR PK G V K+FK K+++R + G+ Sbjct: 5 SKRMKALSTKIEDRTYAPLE-ALGIVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPNGTGQSIKIAVITSGENVAKAKSAGADLFGEEDLVESINK---GNMDFDLL--IATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTGDIASAIKEFKAGKLEFRADKAGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_WOLSU (50S ribosomal protein L1 OS=Wolinella succinogenes GN=rplA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.836e-20 Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 +KR + + + +K YD+ TA +K ++S KF ET E +L +DP++ DQ +R V LP GTGK V+VAV A+G K DEAK A AD+VG DDL E+IK Sbjct: 6 TKRMQALLDKVDTQKVYDITTASVSVKSLASAKFDETVEVALKLGVDPRHADQMIRGAVVLPHGTGKKVRVAVFAKGVKADEAKAAGADVVGDDDLAEEIK 106 HSP 2 Score: 24.2534 bits (51), Expect = 2.836e-20 Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 G+I GL+PN K GT T ++ +A Sbjct: 129 GRILGPKGLMPNPKTGTVTADVTKA 153
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THESQ (50S ribosomal protein L1 OS=Thermotoga sp. (strain RQ2) GN=rplA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 2.977e-20 Identity = 65/162 (40.12%), Postives = 91/162 (56.17%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 SKR+LE + L + K YDL AI L+K+ ++ KF ET E H + ID + +Q +R T+ LP GTGK VKV V A+GEK EA A AD VG +DL+E+I++ L + T + R + K L PR PK G V K+FK+ +++ R Sbjct: 5 SKRYLEARKLVDRTKYYDLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTIVLPHGTGKEVKVLVFAKGEKAKEALEAGADYVGAEDLVEKIEKE-GFLDFDVAIATPDMMRIIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVR 165
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THEMA (50S ribosomal protein L1 OS=Thermotoga maritima GN=rplA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 2.977e-20 Identity = 65/162 (40.12%), Postives = 91/162 (56.17%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980 SKR+LE + L + K YDL AI L+K+ ++ KF ET E H + ID + +Q +R T+ LP GTGK VKV V A+GEK EA A AD VG +DL+E+I++ L + T + R + K L PR PK G V K+FK+ +++ R Sbjct: 5 SKRYLEARKLVDRTKYYDLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTIVLPHGTGKEVKVLVFAKGEKAKEALEAGADYVGAEDLVEKIEKE-GFLDFDVAIATPDMMRIIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVR 165
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNPX (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH8102) GN=rplA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 2.977e-20 Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 3 Query: 546 YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 Y+ AI+L+K ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG++V++AV +GEK EAK A A+L G +DL+E I + G + + L I PK + L PR PK G V ++FK K+++R + G+ Sbjct: 20 YEPLEAIALVKDNATAKFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQTVRIAVVTRGEKVAEAKAAGAELAGDEDLVETIAK---GEMEFDLL--IATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTIDLAGAIQEFKAGKLEFRADRTGI 169
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_PHATR (50S ribosomal protein L1, chloroplastic OS=Phaeodactylum tricornutum GN=rpl1 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 2.977e-20 Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = 3 Query: 549 DLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998 ++ AI++LK+ ++TKF E+ E H LNIDPKY DQQLR TV+LP G GK V +AV E F+EAK++ D+VG D+LI QI + Q N I PK + L P+ PK G V T +FK+ K +Y+ + G+ Sbjct: 22 NIDEAIAVLKETATTKFVESVELHANLNIDPKYADQQLRTTVTLPNGIGKQVVIAVLTNEENFEEAKSSGGDIVGNDELIAQITQ-----GQINFDLLIATPNMMPKLAKLGRMLGPKGLMPSPKSGTVTSTLQSTLTEFKKGKFEYKADKTGI 170
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ALKOO (50S ribosomal protein L1 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 3.690e-20 Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 3 Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 + K++ E L + YD K AI L K+ ++ KF ET EAH +L +D ++ DQQ+R V LP GTGK+V++ V A+GEK EA+ A AD VGGD+L+ +I+ Sbjct: 4 KGKKYQEALKLVDKTNLYDPKEAIELAKKTATAKFDETVEAHIKLGVDSRHADQQVRGAVVLPHGTGKTVRILVFAKGEKAIEAEKAGADYVGGDELVAKIQ 105 HSP 2 Score: 24.6386 bits (52), Expect = 3.690e-20 Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 G++ GL+PN K+GT T +L +A Sbjct: 129 GRVLGPKGLMPNPKSGTVTFDLTKA 153
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ALKMQ (50S ribosomal protein L1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 3.690e-20 Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = 3 Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 R K++ E + +K YD A+ L+K+ ++ KF ET EAH +L +D ++ DQQ+R + LP GTGK+ KV V A+GEK EA+ A AD VG DDL+ +I+ Sbjct: 4 RGKKYQEALKQFDREKSYDPNEAVVLVKKTATAKFDETIEAHIKLGVDSRHADQQVRGAIVLPHGTGKTAKVLVFAKGEKVTEAEKAGADYVGSDDLVAKIQ 105 HSP 2 Score: 24.6386 bits (52), Expect = 3.690e-20 Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 G++ GL+PN K+GT T +L +A Sbjct: 129 GRVLGPKGLMPNPKSGTVTFDLERA 153
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_LACCB (50S ribosomal protein L1 OS=Lactobacillus casei (strain BL23) GN=rplA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.691e-20 Identity = 46/102 (45.10%), Postives = 69/102 (67.65%), Query Frame = 3 Query: 495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800 + K++LE + K+Y + A+ LLK++ KF ET E +RLN+DPK DQQ+R V LP GTGK+ KV V AQG++ A++A AD+VG +DL+++I+ Sbjct: 4 KGKKYLEAAKAVDPTKQYTPEEAVDLLKKIDFAKFDETVEVAYRLNVDPKQADQQIRGAVVLPNGTGKTAKVIVFAQGDQAKAAEDAGADIVGAEDLVQKIQ 105 HSP 2 Score: 22.7126 bits (47), Expect = 3.691e-20 Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2 Query: 869 GKIP*TTGLLPNSKAGTGTTNLPQA 943 G++ GL+PN K GT T + +A Sbjct: 128 GRVLGPKGLMPNPKTGTVTMDTAKA 152 The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bpback to top |