DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNS3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9311) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.280e-20
Identity = 64/157 (40.76%), Postives = 89/157 (56.69%), Query Frame = 3
Query:  540 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            + Y    AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP+GTG++V++AV  +GEK  EAK A A+L G +DL+E I +      + N    I      PK     + L PR     PK G V        ++FK  K+++R +  G+
Sbjct:   18 RAYQPLEAIQLVKENATAKFDETMEAHVRLGIDPKYTDQQLRTTVALPQGTGQTVRIAVITRGEKVAEAKAAGAELSGDEDLVEAISK-----GEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLASAIQEFKAGKLEFRADRTGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_PROMP (50S ribosomal protein L1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.280e-20
Identity = 68/171 (39.77%), Postives = 94/171 (54.97%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKR   +    E +    L+ A+ ++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+K+AV   GE   +AK+A ADL G +DL+E I +   G    + L  I      PK     + L PR     PK G V        K+FK  K+++R +  G+
Sbjct:    5 SKRMKALSTKIEDRTYAPLE-ALGIVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPNGTGQSIKIAVITSGENVAKAKSAGADLFGEEDLVESINK---GNMDFDLL--IATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTGDIASAIKEFKAGKLEFRADKAGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_WOLSU (50S ribosomal protein L1 OS=Wolinella succinogenes GN=rplA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.836e-20
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            +KR   + +  + +K YD+ TA   +K ++S KF ET E   +L +DP++ DQ +R  V LP GTGK V+VAV A+G K DEAK A AD+VG DDL E+IK
Sbjct:    6 TKRMQALLDKVDTQKVYDITTASVSVKSLASAKFDETVEVALKLGVDPRHADQMIRGAVVLPHGTGKKVRVAVFAKGVKADEAKAAGADVVGDDDLAEEIK 106          

HSP 2 Score: 24.2534 bits (51), Expect = 2.836e-20
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G+I    GL+PN K GT T ++ +A
Sbjct:  129 GRILGPKGLMPNPKTGTVTADVTKA 153          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THESQ (50S ribosomal protein L1 OS=Thermotoga sp. (strain RQ2) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.977e-20
Identity = 65/162 (40.12%), Postives = 91/162 (56.17%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            SKR+LE + L +  K YDL  AI L+K+ ++ KF ET E H +  ID +  +Q +R T+ LP GTGK VKV V A+GEK  EA  A AD VG +DL+E+I++    L     + T +  R   +  K L PR     PK G V        K+FK+ +++ R
Sbjct:    5 SKRYLEARKLVDRTKYYDLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTIVLPHGTGKEVKVLVFAKGEKAKEALEAGADYVGAEDLVEKIEKE-GFLDFDVAIATPDMMRIIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVR 165          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_THEMA (50S ribosomal protein L1 OS=Thermotoga maritima GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.977e-20
Identity = 65/162 (40.12%), Postives = 91/162 (56.17%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            SKR+LE + L +  K YDL  AI L+K+ ++ KF ET E H +  ID +  +Q +R T+ LP GTGK VKV V A+GEK  EA  A AD VG +DL+E+I++    L     + T +  R   +  K L PR     PK G V        K+FK+ +++ R
Sbjct:    5 SKRYLEARKLVDRTKYYDLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTIVLPHGTGKEVKVLVFAKGEKAKEALEAGADYVGAEDLVEKIEKE-GFLDFDVAIATPDMMRIIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVR 165          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNPX (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH8102) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.977e-20
Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  546 YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            Y+   AI+L+K  ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG++V++AV  +GEK  EAK A A+L G +DL+E I +   G  + + L  I      PK     + L PR     PK G V        ++FK  K+++R +  G+
Sbjct:   20 YEPLEAIALVKDNATAKFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQTVRIAVVTRGEKVAEAKAAGAELAGDEDLVETIAK---GEMEFDLL--IATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTIDLAGAIQEFKAGKLEFRADRTGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_PHATR (50S ribosomal protein L1, chloroplastic OS=Phaeodactylum tricornutum GN=rpl1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.977e-20
Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = 3
Query:  549 DLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            ++  AI++LK+ ++TKF E+ E H  LNIDPKY DQQLR TV+LP G GK V +AV    E F+EAK++  D+VG D+LI QI +      Q N    I      PK     + L P+     PK G V  T      +FK+ K +Y+ +  G+
Sbjct:   22 NIDEAIAVLKETATTKFVESVELHANLNIDPKYADQQLRTTVTLPNGIGKQVVIAVLTNEENFEEAKSSGGDIVGNDELIAQITQ-----GQINFDLLIATPNMMPKLAKLGRMLGPKGLMPSPKSGTVTSTLQSTLTEFKKGKFEYKADKTGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ALKOO (50S ribosomal protein L1 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.690e-20
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            + K++ E   L +    YD K AI L K+ ++ KF ET EAH +L +D ++ DQQ+R  V LP GTGK+V++ V A+GEK  EA+ A AD VGGD+L+ +I+
Sbjct:    4 KGKKYQEALKLVDKTNLYDPKEAIELAKKTATAKFDETVEAHIKLGVDSRHADQQVRGAVVLPHGTGKTVRILVFAKGEKAIEAEKAGADYVGGDELVAKIQ 105          

HSP 2 Score: 24.6386 bits (52), Expect = 3.690e-20
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T +L +A
Sbjct:  129 GRVLGPKGLMPNPKSGTVTFDLTKA 153          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_ALKMQ (50S ribosomal protein L1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.690e-20
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            R K++ E     + +K YD   A+ L+K+ ++ KF ET EAH +L +D ++ DQQ+R  + LP GTGK+ KV V A+GEK  EA+ A AD VG DDL+ +I+
Sbjct:    4 RGKKYQEALKQFDREKSYDPNEAVVLVKKTATAKFDETIEAHIKLGVDSRHADQQVRGAIVLPHGTGKTAKVLVFAKGEKVTEAEKAGADYVGSDDLVAKIQ 105          

HSP 2 Score: 24.6386 bits (52), Expect = 3.690e-20
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K+GT T +L +A
Sbjct:  129 GRVLGPKGLMPNPKSGTVTFDLERA 153          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_LACCB (50S ribosomal protein L1 OS=Lactobacillus casei (strain BL23) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.691e-20
Identity = 46/102 (45.10%), Postives = 69/102 (67.65%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            + K++LE     +  K+Y  + A+ LLK++   KF ET E  +RLN+DPK  DQQ+R  V LP GTGK+ KV V AQG++   A++A AD+VG +DL+++I+
Sbjct:    4 KGKKYLEAAKAVDPTKQYTPEEAVDLLKKIDFAKFDETVEVAYRLNVDPKQADQQIRGAVVLPNGTGKTAKVIVFAQGDQAKAAEDAGADIVGAEDLVQKIQ 105          

HSP 2 Score: 22.7126 bits (47), Expect = 3.691e-20
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K GT T +  +A
Sbjct:  128 GRVLGPKGLMPNPKTGTVTMDTAKA 152          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SYNS32.280e-2040.7650S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_PROMP2.280e-2039.7750S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_WOLSU2.836e-2048.5150S ribosomal protein L1 OS=Wolinella succinogenes... [more]
RL1_THESQ2.977e-2040.1250S ribosomal protein L1 OS=Thermotoga sp. (strain... [more]
RL1_THEMA2.977e-2040.1250S ribosomal protein L1 OS=Thermotoga maritima GN... [more]
RL1_SYNPX2.977e-2041.9450S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RK1_PHATR2.977e-2040.2650S ribosomal protein L1, chloroplastic OS=Phaeoda... [more]
RL1_ALKOO3.690e-2046.0850S ribosomal protein L1 OS=Alkaliphilus oremlandi... [more]
RL1_ALKMQ3.690e-2045.1050S ribosomal protein L1 OS=Alkaliphilus metallire... [more]
RL1_LACCB3.691e-2045.1050S ribosomal protein L1 OS=Lactobacillus casei (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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