DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_LACC3 (50S ribosomal protein L1 OS=Lactobacillus casei (strain ATCC 334) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.691e-20
Identity = 46/102 (45.10%), Postives = 69/102 (67.65%), Query Frame = 3 
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIK 800
            + K++LE     +  K+Y  + A+ LLK++   KF ET E  +RLN+DPK  DQQ+R  V LP GTGK+ KV V AQG++   A++A AD+VG +DL+++I+
Sbjct:    4 KGKKYLEAAKAVDPTKQYTPEEAVDLLKKIDFAKFDETVEVAYRLNVDPKQADQQIRGAVVLPNGTGKTAKVIVFAQGDQAKAAEDAGADIVGAEDLVQKIQ 105

HSP 2 Score: 22.7126 bits (47), Expect = 3.691e-20
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            G++    GL+PN K GT T +  +A
Sbjct:  128 GRVLGPKGLMPNPKTGTVTMDTAKA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNWW (50S ribosomal protein L1 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 5.078e-20
Identity = 60/145 (41.38%), Postives = 82/145 (56.55%), Query Frame = 3 
Query:  546 YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            Y+ K A+ L+K+++  KF ET E H +L +DP++ DQQ+R TVSLP GTGK+ KV V A+GEK  EA+ A AD VGG+DL E+I+        A     +         K L PR     PK G V     R  K+ K  +++YR
Sbjct:   20 YEPKEALELVKEIAKAKFDETVEVHIKLGVDPRHADQQVRGTVSLPNGTGKTRKVLVFAKGEKIKEAELAGADYVGGEDLAEKIQGGWFDFDVAVATPDMMA-VVGKMGKILGPRGLMPNPKAGTVTFDIERTIKELKAGRIEYR 163
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HAES2 (50S ribosomal protein L1 OS=Haemophilus somnus (strain 2336) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.632e-20
Identity = 61/171 (35.67%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+Y++  AI++LKQ +STKF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   D AK A ADLVG +DL EQIK+        +   + +  +         + L PR     PK+G V P      K  K  +++YR + +G+
Sbjct:    5 TKRMKAIKAGVDSTKQYEINEAITVLKQFTSTKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANVDSAKAAGADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGI 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_ODOSI (50S ribosomal protein L1, chloroplastic OS=Odontella sinensis GN=rpl1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.632e-20
Identity = 58/150 (38.67%), Postives = 83/150 (55.33%), Query Frame = 3 
Query:  549 DLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +L+ AI++L++ ++ KFTET E H  LNIDPKY DQQLR TV+LP G GK++ +AV      F EA+ A AD VG DDLIE+I +             +   +     + L P+     PK G V  T      +FK+ K +Y+ +  G+
Sbjct:   22 NLEDAITILQETATAKFTETVELHANLNIDPKYADQQLRTTVTLPHGIGKTINIAVLTNDSNFTEAREAGADRVGSDDLIEEISQGNISFDLLIATPDMMP-KLAKLGRVLGPKGLMPSPKSGTVSTTLTATLSEFKKGKFEYKADKAGV 170
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BRUSU (50S ribosomal protein L1 OS=Brucella suis GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.120e-20
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIE 791
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK A AD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102

HSP 2 Score: 25.409 bits (54), Expect = 8.120e-20
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    G++PN K GT TT++  A
Sbjct:  128 GKVLGPRGMMPNPKVGTVTTDVAAA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BRUSI (50S ribosomal protein L1 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.120e-20
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIE 791
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK A AD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102

HSP 2 Score: 25.409 bits (54), Expect = 8.120e-20
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    G++PN K GT TT++  A
Sbjct:  128 GKVLGPRGMMPNPKVGTVTTDVAAA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BRUO2 (50S ribosomal protein L1 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.120e-20
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIE 791
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK A AD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102

HSP 2 Score: 25.409 bits (54), Expect = 8.120e-20
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    G++PN K GT TT++  A
Sbjct:  128 GKVLGPRGMMPNPKVGTVTTDVAAA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BRUMB (50S ribosomal protein L1 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.120e-20
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIE 791
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK A AD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102

HSP 2 Score: 25.409 bits (54), Expect = 8.120e-20
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    G++PN K GT TT++  A
Sbjct:  128 GKVLGPRGMMPNPKVGTVTTDVAAA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BRUC2 (50S ribosomal protein L1 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.120e-20
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIE 791
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK A AD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102

HSP 2 Score: 25.409 bits (54), Expect = 8.120e-20
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    G++PN K GT TT++  A
Sbjct:  128 GKVLGPRGMMPNPKVGTVTTDVAAA 152
[Close]
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BRUAB (50S ribosomal protein L1 OS=Brucella abortus GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.120e-20
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 3 
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIE 791
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK A AD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102

HSP 2 Score: 25.409 bits (54), Expect = 8.120e-20
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    G++PN K GT TT++  A
Sbjct:  128 GKVLGPRGMMPNPKVGTVTTDVAAA 152
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_LACC33.691e-2045.1050S ribosomal protein L1 OS=Lactobacillus casei (s... [more]
RL1_SYNWW5.078e-2041.3850S ribosomal protein L1 OS=Syntrophomonas wolfei ... [more]
RL1_HAES26.632e-2035.6750S ribosomal protein L1 OS=Haemophilus somnus (st... [more]
RK1_ODOSI6.632e-2038.6750S ribosomal protein L1, chloroplastic OS=Odontel... [more]
RL1_BRUSU8.120e-2046.9450S ribosomal protein L1 OS=Brucella suis GN=rplA ... [more]
RL1_BRUSI8.120e-2046.9450S ribosomal protein L1 OS=Brucella suis (strain ... [more]
RL1_BRUO28.120e-2046.9450S ribosomal protein L1 OS=Brucella ovis (strain ... [more]
RL1_BRUMB8.120e-2046.9450S ribosomal protein L1 OS=Brucella melitensis bi... [more]
RL1_BRUC28.120e-2046.9450S ribosomal protein L1 OS=Brucella canis (strain... [more]
RL1_BRUAB8.120e-2046.9450S ribosomal protein L1 OS=Brucella abortus GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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