DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BRUA2 (50S ribosomal protein L1 OS=Brucella abortus (strain 2308) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.120e-20
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIE 791
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK A AD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102          

HSP 2 Score: 25.409 bits (54), Expect = 8.120e-20
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    G++PN K GT TT++  A
Sbjct:  128 GKVLGPRGMMPNPKVGTVTTDVAAA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BRUA1 (50S ribosomal protein L1 OS=Brucella abortus (strain S19) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.120e-20
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIE 791
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK A AD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102          

HSP 2 Score: 25.409 bits (54), Expect = 8.120e-20
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    G++PN K GT TT++  A
Sbjct:  128 GKVLGPRGMMPNPKVGTVTTDVAAA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SYNS9 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9902) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.662e-20
Identity = 64/157 (40.76%), Postives = 85/157 (54.14%), Query Frame = 3
Query:  540 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            + Y    AI+L+K  ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG++V++AV   GEK   AK A A+L G +DL+E I +      + N    I      PK     + L PR     PK G V        K FK  K+++R +  G+
Sbjct:   18 RTYGPLEAIALVKDNANAKFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQTVRIAVVTSGEKVAAAKAAGAELAGDEDLVEAISK-----GEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKDFKAGKLEFRADRTGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_SELRU (50S ribosomal protein L1 OS=Selenomonas ruminantium GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.662e-20
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            K++ +   L E  K Y    A+ L+K+ ++ KF ET E H RL +DPKY DQQ+R  + LP GTGKS +V V A+GEK  EA+ A AD VG D+++++I+        A     + G       K L PR     PKLG V     +   + K  KV+YR
Sbjct:    6 KKYQDACKLVEAGKFYTAAEAMELVKKTATKKFDETIELHVRLGVDPKYADQQVRGAMVLPHGTGKSKRVLVFAKGEKVKEAEAAGADFVGSDEIVQKIQGGWLDFDVAVATPDMMG-TVGRLGKVLGPRGLMPNPKLGTVTMDLTKAVSEIKAGKVEYR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_HAES1 (50S ribosomal protein L1 OS=Haemophilus somnus (strain 129Pt) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.662e-20
Identity = 61/171 (35.67%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPG----LQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            +KR   I+   +  K+Y++  AI++LKQ +STKF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   D AK A ADLVG +DL EQIK+        +   + +  +         + L PR     PK+G V P      K  K  +++YR + +G+
Sbjct:    5 TKRMKAIKAGVDSTKQYEINEAITVLKQFTSTKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANVDAAKAAGADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVG-----QLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CHLAB (50S ribosomal protein L1 OS=Chlamydophila abortus GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.662e-20
Identity = 60/167 (35.93%), Postives = 89/167 (53.29%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGLC 1001
            KR   I    +  K Y L+ AI +LKQ    +F +T +   +L IDPK +DQQ+R +VSLP GTGK++K+ V A GEK  EA +A AD VG DDL+E+I+        A     +         K L PR+    PK G V     +   + ++ K++++ +  G+C
Sbjct:    6 KRIRGILKSYDFSKSYSLQEAIDILKQCPPVRFDQTVDVSIKLGIDPKKSDQQIRGSVSLPHGTGKTLKILVFAAGEKAKEALDAGADFVGSDDLVEKIRGGWVDCDVAVATPDMMR-EVGKLGKVLGPRNLMPTPKAGTVTMDVTKTIAELRKGKIEFKADRAGVC 171          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_OCHA4 (50S ribosomal protein L1 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.056e-19
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIE 791
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK A AD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETIEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102          

HSP 2 Score: 25.409 bits (54), Expect = 1.056e-19
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    G++PN K GT TT++  A
Sbjct:  128 GKVLGPRGMMPNPKVGTVTTDVAAA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_BRUME (50S ribosomal protein L1 OS=Brucella melitensis GN=rplA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.056e-19
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIE 791
            SKR  +I    +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK A AD+VG ++L E
Sbjct:    5 SKRINKIHEGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102          

HSP 2 Score: 25.409 bits (54), Expect = 1.056e-19
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  869 GKIP*TTGLLPNSKAGTGTTNLPQA 943
            GK+    G++PN K GT TT++  A
Sbjct:  128 GKVLGPRGMMPNPKVGTVTTDVAAA 152          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_MOOTA (50S ribosomal protein L1 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.131e-19
Identity = 61/160 (38.12%), Postives = 88/160 (55.00%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYR 980
            KR+ E+  L   ++ Y+   AI LLK+ +S KF ET E   +L +DP++ DQQ+R TV LP GTGK+ +V V A+G+K  EA+ A AD VG +DL+E+I+        A     + G       + L PR     PK G V     R  K+ K  K+++R
Sbjct:    6 KRYREVSKLVSRQELYEPDEAIELLKKTASAKFDETVEVAVKLGVDPRHADQQVRGTVVLPNGTGKTRRVLVFAKGDKAKEAEEAGADFVGAEDLVEKIQGGWLDFDVAIATPDMMG-LVGRLGRILGPRGLMPNPKAGTVTMDIARAVKEVKAGKIEFR 164          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_DEIGD (50S ribosomal protein L1 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.131e-19
Identity = 56/166 (33.73%), Postives = 89/166 (53.61%), Query Frame = 3
Query:  501 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            KR+  +    +  ++Y +  A +L+K +++ KF ET E HFRL IDP+ +DQ +R TV+LP GTGK+V+VAV  +G+    A+ A AD+VGG+DLI++I               +         + L PR     PK G V P      +  K  ++++R +  G+
Sbjct:    6 KRYRALIEKVDRNRQYSIDEAAALVKDLATAKFDETVEVHFRLGIDPRKSDQNVRGTVALPHGTGKTVRVAVITKGDNVAAAEAAGADVVGGEDLIDRIANGFMDFDAVVATPDMMAQIGQKLARLLGPRGLLPNPKSGTVGPDVAGMVRGLKAGRIEFRNDKTGV 171          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BRUA28.120e-2046.9450S ribosomal protein L1 OS=Brucella abortus (stra... [more]
RL1_BRUA18.120e-2046.9450S ribosomal protein L1 OS=Brucella abortus (stra... [more]
RL1_SYNS98.662e-2040.7650S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SELRU8.662e-2038.7550S ribosomal protein L1 OS=Selenomonas ruminantiu... [more]
RL1_HAES18.662e-2035.6750S ribosomal protein L1 OS=Haemophilus somnus (st... [more]
RL1_CHLAB8.662e-2035.9350S ribosomal protein L1 OS=Chlamydophila abortus ... [more]
RL1_OCHA41.056e-1946.9450S ribosomal protein L1 OS=Ochrobactrum anthropi ... [more]
RL1_BRUME1.056e-1946.9450S ribosomal protein L1 OS=Brucella melitensis GN... [more]
RL1_MOOTA1.131e-1938.1350S ribosomal protein L1 OS=Moorella thermoacetica... [more]
RL1_DEIGD1.131e-1933.7350S ribosomal protein L1 OS=Deinococcus geothermal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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