DT214587
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2_XENTR (Poly(A) RNA polymerase GLD2 OS=Xenopus tropicalis GN=papd4 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27 Identity = 75/218 (34.40%), Postives = 118/218 (54.13%), Query Frame = -3 Query: 240 RARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLH----------GFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEK-DWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERA 860 +A+VPIVK D V+G D+ +NN++ + NT LLR YA I+ R++ L ++K WA G+N +GTLSSY VLM +H+LQ I+P LQ K Y EC FD +LH + S+N+ +G L+ F Y+A D++ ++ISVR + + + +W + IC+E+P++ T+ V ++ ++R EF RA Sbjct: 302 KAKVPIVKFRDKVSGAEFDLNVNNVVGIRNTFLLRTYAYIENRVRPLVLVIKMWANYHGLNDASRGTLSSYTLVLMALHYLQTLPEPIIPSLQ---KKYP------EC--FDSTMQLHLVHHAPRNIPKYLSKNETPLGDLLLGFLKYFAIEFDWSKDIISVREAKALPRSDDYEWRNK------FICVEEPYDRTNTARAVYERQKFDMIRAEFLRA 502
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2_MOUSE (Poly(A) RNA polymerase GLD2 OS=Mus musculus GN=Papd4 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.352e-26 Identity = 68/207 (32.85%), Postives = 114/207 (55.07%), Query Frame = -3 Query: 249 LTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISK-QEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEF 866 L RA+VPIVK D V+ + D+ +NN + + NT LLR YA ++ R++ L ++K WA +N +GTLSSY+ VLM +H+LQ ILP LQ + T + + + + + S+N+ S+G L+ F Y+A D+ + +ISVR I + + +W + IC+E+PF+ T+ V +K +++++F Sbjct: 259 LIRAKVPIVKFRDKVSCVEFDLNVNNTVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHDINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSTSVQLHLVHHAPCN-VPPYLSKNESSLGDLLLGFLKYYATEFDWNTQMISVREAKAIPRPDDMEWRNK------YICVEEPFDGTNTARAVHEKQKFDMIKDQF 458
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2_RAT (Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus GN=Papd4 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.296e-26 Identity = 68/207 (32.85%), Postives = 114/207 (55.07%), Query Frame = -3 Query: 249 LTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISK-QEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEF 866 L RA+VPIVK D V+ + D+ +NN + + NT LLR YA ++ R++ L ++K WA +N +GTLSSY+ VLM +H+LQ ILP LQ + T + + + + + S+N+ S+G L+ F Y+A D+ + +ISVR I + + +W + IC+E+PF+ T+ V +K +++++F Sbjct: 259 LIRAKVPIVKFRDKVSCVEFDLNVNNTVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHEINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSTSVQLHLVHHAPCN-VPPYLSKNESSLGDLLLGFLKYYATEFDWNTQMISVREAKAIPRPDDMEWRNK------YICVEEPFDGTNTARAVHEKQKFDMIKDQF 458
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2_HUMAN (Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAPD4 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.415e-25 Identity = 71/209 (33.97%), Postives = 116/209 (55.50%), Query Frame = -3 Query: 249 LTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDD-IECAYFDQVD-KLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEK-DWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEF 866 L RA+VPIVK D V+ + D+ +NN++ + NT LLR YA ++ R++ L ++K WA +N +GTLSSY+ VLM +H+LQ ILP LQ K Y + I+ Q + + S+N+ ++G L+ F Y+A D+ S +ISVR I + + +W + IC+E+PF+ T+ V +K +++++F Sbjct: 259 LIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQ---KIYPESFSPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIEWRNK------YICVEEPFDGTNTARAVHEKQKFDMIKDQF 458
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2_BOVIN (Poly(A) RNA polymerase GLD2 OS=Bos taurus GN=PAPD4 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.415e-25 Identity = 70/209 (33.49%), Postives = 116/209 (55.50%), Query Frame = -3 Query: 249 LTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVD-DIECAYFDQVD-KLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEK-DWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEF 866 L RA+VPIVK D V+ + D+ +NN++ + NT LLR YA ++ R++ L ++K WA +N +GTLSSY+ VLM +H+LQ ILP +Q K Y + I+ Q + + S+N+ ++G L+ F Y+A D+ S +ISVR I + + +W + IC+E+PF+ T+ V +K +++++F Sbjct: 259 LIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHDINDASRGTLSSYSLVLMVLHYLQTLPEPILPSIQ---KIYPESFSPSIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIEWRNK------YICVEEPFDGTNTARAVHEKQKFDMIKDQF 458
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2A_DROME (Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster GN=Gld2 PE=1 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 2.951e-23 Identity = 69/223 (30.94%), Postives = 113/223 (50.67%), Query Frame = -3 Query: 249 DILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ-QRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHL---ICIEDPFEVTHDLGRVVDKFSIKVLREEF 905 ++L N+ L ARVPI++ D + DI NN + + NT LL Y+Q+D R++ +A VK WA+ +N T+SSY+ +LM IHFLQ P +LPCL + + + Y D + + + S N +++G L+ +F +Y++ DY IS+R G + + ND H +CIE+PF+ T+ V D + + ++ F Sbjct: 1021 ELLGRTNMFQDFNLIEARVPILRFTDRCHKVEVDINFNNSVGIRNTHLLYCYSQLDWRVRPMALTVKQWAQYHNINNAKNMTISSYSLMLMVIHFLQVGASPPVLPCLHNLYPEKFGLLQPNDFGYVDMNEVMAPYQSDNSQTLGDLLLSFLHYYSV-FDYGKYAISIRVGGVLPIEVCRAATAPKNDIHQWNELCIEEPFDQTNTARSVYDTDTFERIKTIF 1242
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2B_DROME (Poly(A) RNA polymerase gld-2 homolog B OS=Drosophila melanogaster GN=wisp PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.912e-22 Identity = 73/240 (30.42%), Postives = 124/240 (51.67%), Query Frame = -3 Query: 165 LTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQR-RPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHL---ICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLFEP--YVPG*FKQ 866 L ARVPI++ D GI D+ NN + + NT LL+ YAQ+D R + L IVK WA+ +N + T+SSY+ VLM +H+LQ P +LPCL + + +C D ++ + + + N +++G + FF Y++ D+ + IS+RTG + + ND + + IE+PF++++ V D + + ++ F +A + H + +F P +VP F Q Sbjct: 1083 LIEARVPILRFKDISNGIEVDLNFNNCVGIKNTYLLQLYAQMDWRTRPLVVIVKLWAQYHDINDAKRMTISSYSLVLMVLHYLQHACVPHVLPCLHSLYPE-KFQLGQQDCLDLDLIEPIEPYQALNTQTLGEHLLGFFKYYS-TFDFRNFAISIRTGGVLPVSTCRMAKSPKNDVYQWKELNIEEPFDLSNTARSVYDGPTFERVKAVFLISARRLDHTLD-LATIFRPIHHVPEHFPQ 1319
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: CID16_SCHPO (Caffeine-induced protein 16 OS=Schizosaccharomyces pombe GN=cid16 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 2.114e-21 Identity = 70/245 (28.57%), Postives = 123/245 (50.20%), Query Frame = -3 Query: 183 DNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDD-----IECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWA----YGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLFEPYV 890 + NV + AR+PI+K I CD+ +NLL + N+ L+ +Y+ ID R++ L +VK+WA +R ++ T+ SSY + +M I +LQQ ILP LQ + YS V D + C + + G + +++I L+ FF Y+ Y D+ + +I + + S + ++ ++ D + + DPF +L + + + S+KV+R E ERA I+ L +P + Sbjct: 965 NEFSNVMPIRGARIPIIKFTGQYN-IHCDLSFDNLLPIHNSDLILNYSLIDERVKTLLMLVKYWASNRLIDKTHHAFPSSYTWCIMVIFYLQQIPEPILPNLQKLSTQYSKIVRDNDYGNVNCWFNRDTECYRGSMQKGRKNIALLLRGFFCYYGLTTQYSFDWEAYMIDI-SSSQLKRKSTEF-----KDCPFVVL-DPFLKKKNLTKALTQKSVKVVRYELERACRILSDPKCNLDHLLDPLI 1201
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: PAPD1_MOUSE (Poly(A) RNA polymerase, mitochondrial OS=Mus musculus GN=Mtpap PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 4.127e-17 Identity = 58/224 (25.89%), Postives = 112/224 (50.00%), Query Frame = -3 Query: 219 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGT-LSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSV----TVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHD 875 VQ + AR P+V+ +G CD+ NN +A+ +++LL Y +D R++ L F V+ WA++ + + G +++++ +M I FLQ+R P ILP L ++ ++ C + V+K+ G N E++ L+ FF Y+ + N I++R G +K D + I++PFE + ++ + V + ++ E +A I++ + Sbjct: 305 VQKILNARCPLVRFSHQGSGFQCDLTANNSIALKSSELLYIYGSLDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTVMVIFFLQRRSPPILPTLDSLKSIADAEDRCILEGNNCTFVQDVNKIQPSG--NTETLELLIKEFFEYFG-NFAFNKNSINIRQGREQNKP----------DSSPLYIQNPFETSLNISKNVSQSQLQKFVELARDSAWILEQE 515
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2_CAEEL (Poly(A) RNA polymerase gld-2 OS=Caenorhabditis elegans GN=gld-2 PE=1 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 4.127e-17 Identity = 61/185 (32.97%), Postives = 96/185 (51.89%), Query Frame = -3 Query: 381 LQSDNLQNVQALTRARVPIVKL--MDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGM----------EKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISK 899 LQ + Q L A+VPI+++ P I+ D+ NN +A+ NT LL Y+ D R++ L +VK WAK +G+N + + +SY+ VLM IHFLQ +LP LQ +T +VT+ E A D +D+ K ++G L+ F +Y+A +Y + IS+R G + + Sbjct: 635 LQYEKFVESQKLILAKVPILRINFAAPFDDITVDLNANNSVAIRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSFTSYSLVLMVIHFLQCGPTKVLPNLQQSYPNRFSNKVDVRTLNVTMALEEVA--DDIDQ----SLSEKTTLGELLIGFLDYYANEFNYDRDAISIRQGRRVER 813 The following BLAST results are available for this feature:
BLAST of DT214587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >DT214587 ID=DT214587; Name=DT214587; organism=Citrus sinensis; type=EST; length=907bpback to top |