DT214587

Overview
NameDT214587
Unique NameDT214587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5823 contig Csv1_Contig5823:1497..2403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2_XENTR (Poly(A) RNA polymerase GLD2 OS=Xenopus tropicalis GN=papd4 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27
Identity = 75/218 (34.40%), Postives = 118/218 (54.13%), Query Frame = -3
Query:  240 RARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLH----------GFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEK-DWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERA 860
            +A+VPIVK  D V+G   D+ +NN++ + NT LLR YA I+ R++ L  ++K WA   G+N   +GTLSSY  VLM +H+LQ     I+P LQ   K Y       EC  FD   +LH           + S+N+  +G L+  F  Y+A   D++ ++ISVR    + + +  +W  +       IC+E+P++ T+    V ++    ++R EF RA
Sbjct:  302 KAKVPIVKFRDKVSGAEFDLNVNNVVGIRNTFLLRTYAYIENRVRPLVLVIKMWANYHGLNDASRGTLSSYTLVLMALHYLQTLPEPIIPSLQ---KKYP------EC--FDSTMQLHLVHHAPRNIPKYLSKNETPLGDLLLGFLKYFAIEFDWSKDIISVREAKALPRSDDYEWRNK------FICVEEPYDRTNTARAVYERQKFDMIRAEFLRA 502          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2_MOUSE (Poly(A) RNA polymerase GLD2 OS=Mus musculus GN=Papd4 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.352e-26
Identity = 68/207 (32.85%), Postives = 114/207 (55.07%), Query Frame = -3
Query:  249 LTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISK-QEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEF 866
            L RA+VPIVK  D V+ +  D+ +NN + + NT LLR YA ++ R++ L  ++K WA    +N   +GTLSSY+ VLM +H+LQ     ILP LQ +      T   +   +    + +  + S+N+ S+G L+  F  Y+A   D+ + +ISVR    I +  + +W  +       IC+E+PF+ T+    V +K    +++++F
Sbjct:  259 LIRAKVPIVKFRDKVSCVEFDLNVNNTVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHDINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSTSVQLHLVHHAPCN-VPPYLSKNESSLGDLLLGFLKYYATEFDWNTQMISVREAKAIPRPDDMEWRNK------YICVEEPFDGTNTARAVHEKQKFDMIKDQF 458          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2_RAT (Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus GN=Papd4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.296e-26
Identity = 68/207 (32.85%), Postives = 114/207 (55.07%), Query Frame = -3
Query:  249 LTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISK-QEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEF 866
            L RA+VPIVK  D V+ +  D+ +NN + + NT LLR YA ++ R++ L  ++K WA    +N   +GTLSSY+ VLM +H+LQ     ILP LQ +      T   +   +    + +  + S+N+ S+G L+  F  Y+A   D+ + +ISVR    I +  + +W  +       IC+E+PF+ T+    V +K    +++++F
Sbjct:  259 LIRAKVPIVKFRDKVSCVEFDLNVNNTVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHEINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSTSVQLHLVHHAPCN-VPPYLSKNESSLGDLLLGFLKYYATEFDWNTQMISVREAKAIPRPDDMEWRNK------YICVEEPFDGTNTARAVHEKQKFDMIKDQF 458          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2_HUMAN (Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAPD4 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.415e-25
Identity = 71/209 (33.97%), Postives = 116/209 (55.50%), Query Frame = -3
Query:  249 LTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDD-IECAYFDQVD-KLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEK-DWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEF 866
            L RA+VPIVK  D V+ +  D+ +NN++ + NT LLR YA ++ R++ L  ++K WA    +N   +GTLSSY+ VLM +H+LQ     ILP LQ   K Y  +    I+     Q    +  + S+N+ ++G L+  F  Y+A   D+ S +ISVR    I + +  +W  +       IC+E+PF+ T+    V +K    +++++F
Sbjct:  259 LIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQ---KIYPESFSPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIEWRNK------YICVEEPFDGTNTARAVHEKQKFDMIKDQF 458          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2_BOVIN (Poly(A) RNA polymerase GLD2 OS=Bos taurus GN=PAPD4 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.415e-25
Identity = 70/209 (33.49%), Postives = 116/209 (55.50%), Query Frame = -3
Query:  249 LTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVD-DIECAYFDQVD-KLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEK-DWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEF 866
            L RA+VPIVK  D V+ +  D+ +NN++ + NT LLR YA ++ R++ L  ++K WA    +N   +GTLSSY+ VLM +H+LQ     ILP +Q   K Y  +    I+     Q    +  + S+N+ ++G L+  F  Y+A   D+ S +ISVR    I + +  +W  +       IC+E+PF+ T+    V +K    +++++F
Sbjct:  259 LIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHDINDASRGTLSSYSLVLMVLHYLQTLPEPILPSIQ---KIYPESFSPSIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIEWRNK------YICVEEPFDGTNTARAVHEKQKFDMIKDQF 458          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2A_DROME (Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster GN=Gld2 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.951e-23
Identity = 69/223 (30.94%), Postives = 113/223 (50.67%), Query Frame = -3
Query:  249 DILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ-QRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHL---ICIEDPFEVTHDLGRVVDKFSIKVLREEF 905
            ++L   N+     L  ARVPI++  D    +  DI  NN + + NT LL  Y+Q+D R++ +A  VK WA+   +N     T+SSY+ +LM IHFLQ    P +LPCL  +       +   +  Y D  + +  + S N +++G L+ +F +Y++   DY    IS+R G  +  +         ND H    +CIE+PF+ T+    V D  + + ++  F
Sbjct: 1021 ELLGRTNMFQDFNLIEARVPILRFTDRCHKVEVDINFNNSVGIRNTHLLYCYSQLDWRVRPMALTVKQWAQYHNINNAKNMTISSYSLMLMVIHFLQVGASPPVLPCLHNLYPEKFGLLQPNDFGYVDMNEVMAPYQSDNSQTLGDLLLSFLHYYSV-FDYGKYAISIRVGGVLPIEVCRAATAPKNDIHQWNELCIEEPFDQTNTARSVYDTDTFERIKTIF 1242          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2B_DROME (Poly(A) RNA polymerase gld-2 homolog B OS=Drosophila melanogaster GN=wisp PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.912e-22
Identity = 73/240 (30.42%), Postives = 124/240 (51.67%), Query Frame = -3
Query:  165 LTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQR-RPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHL---ICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLFEP--YVPG*FKQ 866
            L  ARVPI++  D   GI  D+  NN + + NT LL+ YAQ+D R + L  IVK WA+   +N   + T+SSY+ VLM +H+LQ    P +LPCL  +       +   +C   D ++ +  + + N +++G  +  FF Y++   D+ +  IS+RTG  +        +   ND +    + IE+PF++++    V D  + + ++  F  +A  + H  +    +F P  +VP  F Q
Sbjct: 1083 LIEARVPILRFKDISNGIEVDLNFNNCVGIKNTYLLQLYAQMDWRTRPLVVIVKLWAQYHDINDAKRMTISSYSLVLMVLHYLQHACVPHVLPCLHSLYPE-KFQLGQQDCLDLDLIEPIEPYQALNTQTLGEHLLGFFKYYS-TFDFRNFAISIRTGGVLPVSTCRMAKSPKNDVYQWKELNIEEPFDLSNTARSVYDGPTFERVKAVFLISARRLDHTLD-LATIFRPIHHVPEHFPQ 1319          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: CID16_SCHPO (Caffeine-induced protein 16 OS=Schizosaccharomyces pombe GN=cid16 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.114e-21
Identity = 70/245 (28.57%), Postives = 123/245 (50.20%), Query Frame = -3
Query:  183 DNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDD-----IECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWA----YGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLFEPYV 890
            +   NV  +  AR+PI+K       I CD+  +NLL + N+ L+ +Y+ ID R++ L  +VK+WA +R ++ T+    SSY + +M I +LQQ    ILP LQ +   YS  V D     + C +    +   G   + +++I  L+  FF Y+     Y  D+ + +I + + S + ++  ++      D   + + DPF    +L + + + S+KV+R E ERA  I+         L +P +
Sbjct:  965 NEFSNVMPIRGARIPIIKFTGQYN-IHCDLSFDNLLPIHNSDLILNYSLIDERVKTLLMLVKYWASNRLIDKTHHAFPSSYTWCIMVIFYLQQIPEPILPNLQKLSTQYSKIVRDNDYGNVNCWFNRDTECYRGSMQKGRKNIALLLRGFFCYYGLTTQYSFDWEAYMIDI-SSSQLKRKSTEF-----KDCPFVVL-DPFLKKKNLTKALTQKSVKVVRYELERACRILSDPKCNLDHLLDPLI 1201          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: PAPD1_MOUSE (Poly(A) RNA polymerase, mitochondrial OS=Mus musculus GN=Mtpap PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.127e-17
Identity = 58/224 (25.89%), Postives = 112/224 (50.00%), Query Frame = -3
Query:  219 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGT-LSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSV----TVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHD 875
            VQ +  AR P+V+     +G  CD+  NN +A+ +++LL  Y  +D R++ L F V+ WA++  +  +  G  +++++  +M I FLQ+R P ILP L  ++          ++   C +   V+K+   G  N E++  L+  FF Y+     +  N I++R G   +K           D   + I++PFE + ++ + V +  ++   E    +A I++ +
Sbjct:  305 VQKILNARCPLVRFSHQGSGFQCDLTANNSIALKSSELLYIYGSLDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTVMVIFFLQRRSPPILPTLDSLKSIADAEDRCILEGNNCTFVQDVNKIQPSG--NTETLELLIKEFFEYFG-NFAFNKNSINIRQGREQNKP----------DSSPLYIQNPFETSLNISKNVSQSQLQKFVELARDSAWILEQE 515          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: GLD2_CAEEL (Poly(A) RNA polymerase gld-2 OS=Caenorhabditis elegans GN=gld-2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.127e-17
Identity = 61/185 (32.97%), Postives = 96/185 (51.89%), Query Frame = -3
Query:  381 LQSDNLQNVQALTRARVPIVKL--MDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGM----------EKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISK 899
            LQ +     Q L  A+VPI+++    P   I+ D+  NN +A+ NT LL  Y+  D R++ L  +VK WAK +G+N   + + +SY+ VLM IHFLQ     +LP LQ             +T +VT+   E A  D +D+        K ++G L+  F +Y+A   +Y  + IS+R G  + +
Sbjct:  635 LQYEKFVESQKLILAKVPILRINFAAPFDDITVDLNANNSVAIRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSFTSYSLVLMVIHFLQCGPTKVLPNLQQSYPNRFSNKVDVRTLNVTMALEEVA--DDIDQ----SLSEKTTLGELLIGFLDYYANEFNYDRDAISIRQGRRVER 813          
The following BLAST results are available for this feature:
BLAST of DT214587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GLD2_XENTR1.975e-2734.40Poly(A) RNA polymerase GLD2 OS=Xenopus tropicalis ... [more]
GLD2_MOUSE6.352e-2632.85Poly(A) RNA polymerase GLD2 OS=Mus musculus GN=Pap... [more]
GLD2_RAT8.296e-2632.85Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus G... [more]
GLD2_HUMAN1.415e-2533.97Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAP... [more]
GLD2_BOVIN1.415e-2533.49Poly(A) RNA polymerase GLD2 OS=Bos taurus GN=PAPD4... [more]
GLD2A_DROME2.951e-2330.94Poly(A) RNA polymerase gld-2 homolog A OS=Drosophi... [more]
GLD2B_DROME1.912e-2230.42Poly(A) RNA polymerase gld-2 homolog B OS=Drosophi... [more]
CID16_SCHPO2.114e-2128.57Caffeine-induced protein 16 OS=Schizosaccharomyces... [more]
PAPD1_MOUSE4.127e-1725.89Poly(A) RNA polymerase, mitochondrial OS=Mus muscu... [more]
GLD2_CAEEL4.127e-1732.97Poly(A) RNA polymerase gld-2 OS=Caenorhabditis ele... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_03A19_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0003a_A10_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214587 ID=DT214587; Name=DT214587; organism=Citrus sinensis; type=EST; length=907bp
ATAAAATTGCAACTGTCGGTTAAGCCAACAAGTTCTTTACACCCAAGGAT
ATTTAAATAATAAGCTGAAGCCCTAAATACAAAACTATAAAACACAAGAC
CATGGAACGGATGCTTAAGGCTGATCAATCTCTTTTCATTGCAATTACAT
CTCTAACAAGTGTGCTGCTTAAATCAACCAGGAACATAGGGTTCAAAGAG
TTTCACACATGGATTTGGATCATGCTGCATGATTTCAGCAGCACGTTCAA
ACTCCTCCCTTAGAACTTTTATGCTGAACTTGTCCACAACTCGACCAAGG
TCGTGAGTCACCTCAAAGGGATCCTCTATGCATATCAAATGACGGTCATT
TCCAATCCTTCTTGTCCAGTCCTTTTCTTGTTTGCTTATTGTACTTCCGG
TGCGAACGGAAATAACGTTGCTGGCATAATCATGACCATAAGCCCAGTAA
TTGAAAAATGCCCACACAAGTCGACCAATACTTTCCTTGTTACGAGACCC
AAATCCATGAAGTTTGTCAACTTGATCAAAGTAAGCACATTCAATATCAT
CCACAGTCACAGAGTATGTTTTCTCCATTCCCTGTAAGCATGGAAGAATA
GCAGGCCTACGCTGCTGTAAGAAATGAATGCACATCAAAACATACGCATA
GCTAGATAGGGTTCCTTGATAAGTTACATTGACTCCTCTTGATTTAGCCC
AATGTTTAACAATAAAAGCCAACTGCTGCAATCGCACATCTATTTGAGCA
TAATCCCGAAGAAGCTTTGTATTTACAACAGCCAAAAGATTGTTTATGCA
TATGTCACAAGAAATTCCAGTGACTGGATCCATAAGCTTTACTATGGGGA
CCCTTGCCCGTGTCAGTGCCTGCACATTCTGGAGATTATCTGATTGCAAG
ATATCTG
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