DT214584

Overview
NameDT214584
Unique NameDT214584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12308 contig Csv1_Contig12308:85..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_PSEAE (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Pseudomonas aeruginosa GN=sucB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.990e-24
Identity = 64/237 (27.00%), Postives = 129/237 (54.43%), Query Frame = -3
Query:   83 DKTVPLRGFQ----RTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQN--NNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 775
            +K VP+   +      +V+  S  A +  F+   E+N   ++ L++ +++        ++  F+   +K+ + A+ ++P +N+  +    +++  G  +IG+A+++  GL VP ++N + +S+ EI   ++   + AK+ +L   D +GGT T+SN G  G     P++N P+ AI+ M +I++ P ++ +G V   P+M + +  DHR++DG     F    K L+E+P  LLL +
Sbjct:  179 EKRVPMTRLRAKVAERLVEAQSAMAMLTTFN---EVNMKPIMDLRSKYKDLFEKKHNGVRLGFMSFFVKAATEALKRFPGVNASIDGN--DIVYHGYQDIGVAVSSDRGLVVPVLRNAEFMSLAEIEGGIANFGKKAKEGKLTIEDMTGGTFTISNGGVFGSLLSTPIVNPPQTAILGMHKIQERP-MAVNGQVVILPMMYLALSYDHRLIDGKEAVSFLVAIKDLLEDPARLLLDV 409          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_BARQU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella quintana GN=sucB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.990e-24
Identity = 66/222 (29.73%), Postives = 119/222 (53.60%), Query Frame = -3
Query:   83 RTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNN-NSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 745
            R +    + AA +  F+   E++  A++ L+  +++       +K  F+    K++  A+ ++P +N+    +  +++ K   N GIA+ T  GL VP +++   +S+ EI KE+SRL +LA+D +L  +D  GGT T++N G  G     P+LN P+  I+ M  I K   +   G +   P+M + +  DHR++DG     F    K+ +E+PE L+L +
Sbjct:  195 RRLKDAQNTAAMLTTFN---EVDMSAVMDLRKRYKDLFEKKHGVKLGFMGFFTKAVCHALKEFPTVNA--EIDGTDIVYKNYVNAGIAVGTDKGLVVPVVRDADQMSLAEIEKEISRLGRLARDGKLAVSDMQGGTFTITNGGVYGSLMSTPILNAPQSGILGMHAI-KERAMVVGGQIIICPMMYLALSYDHRIVDGQEAVTFLVRVKESLEDPERLVLDL 410          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODP2_RICBR (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.533e-23
Identity = 63/211 (29.86%), Postives = 119/211 (56.40%), Query Frame = -3
Query:   80 IPHFHYVEEINCDALVKLKASFQNN-NSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR 709
            +PHF+   E N D L+ ++     +   D + K +    +I +++ A+ + P  N+ + ++++      + +I +A+A ++GL  P I+N    +I++++ E+  L + A++N+L P +  GG  T+SN+G  G K    ++N P+  I+ +G   K   + +D  +  + IM V + ADHRV+DGA  A+F   +K+ IE+P L+LL  R
Sbjct:  211 VPHFYLSIECNVDKLLDIREDINKSFGDDKSAKISVNDFIILAVAKALQEVPNANASWGDDAIRYY--NNVDISVAVAIENGLVTPIIRNADQKNIVDLSSEMKGLIKKARENKLTPEEFQGGGFTISNLGMYGIKNFNAIINPPQSCIMGVGSSSKRAIVKND-QISIATIMDVTLSADHRVVDGAVGAEFLAAFKRFIESPALMLLYTR 418          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_BARVB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella vinsonii subsp. berkhofii GN=sucB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.533e-23
Identity = 67/222 (30.18%), Postives = 118/222 (53.15%), Query Frame = -3
Query:   83 RTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNN-NSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 745
            R +    + AA +  F+   E++  A++ L+  +++       +K  F+    K++  A+ + P +N+    +  ++I K   N GIA+ T  GL VP +++   +S+ EI KE+ RL +LA+D +L  +D  GGT T++N G  G     P+LN P+  I+ M  I K   +  DG +   P+M + +  DHR++DG     F    K+ +E+PE L+L +
Sbjct:  196 RRLKDAQNTAAMLTTFN---EVDMSAVMGLRKRYKDLFEKKHGVKLGFMGFFTKAVCHALKELPAVNA--EIDGTDIIYKNYVNAGIAVGTDKGLVVPVVRDADQMSLAEIEKEIGRLGRLARDGKLAVSDMQGGTFTITNGGVYGSLMSTPILNAPQSGILGMHAI-KERAMVVDGQIAIRPMMYLALSYDHRIVDGQEAVTFLVRVKESLEDPERLVLDL 411          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: OPD22_ARATH (Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.462e-23
Identity = 74/213 (34.74%), Postives = 116/213 (54.46%), Query Frame = -3
Query:   89 IPHFHYVEEINCDALVKLKA---SFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGA-IGGKFGAPLLNLPEVAIIAMGRIEK--VPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 709
            IPH++   +   D ++ L++   SFQ  +    I    L  +IK+ ++A+ K P  NS + +E +      + NI +A+ T++GL VP +K+     +  I +E+  L Q AK+N L P D  GGT T+SN+G   G K    ++N P+ AI+A+G  EK  VP    D     +  M+V +  DHRV+DGA  A++   +K  IE PE +LL
Sbjct:  332 IPHYYLTVDTCVDKMMGLRSQLNSFQEASGGKRISVNDL--VIKAAALALRKVPQCNSSWTDEYIRQFK--NVNINVAVQTENGLYVPVVKDADKKGLSTIGEEVRFLAQKAKENSLKPEDYEGGTFTVSNLGGPFGIKQFCAVINPPQAAILAIGSAEKRVVPGTGPD-QYNVASYMSVTLSCDHRVIDGAIGAEWLKAFKGYIETPESMLL 539          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: OPD21_ARATH (Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=LTA3 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.462e-23
Identity = 69/212 (32.55%), Postives = 113/212 (53.30%), Query Frame = -3
Query:   89 KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKV--PRLSDDGNVYPSPI--MTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 712
            KIPH +   ++  D L+  +   Q N+    +K +    +IK++++A+      N+ ++ E  ++++  S +I IA+AT+ GL  P IKN    SI  I+ E+  L Q A+  +L P +  GGT ++SN+G         ++N P+  I+A+GR  KV  P +  DG   PS +  M V + ADHR+ DG   A F +E +   E+   LLL
Sbjct:  429 KIPHLYLQSDVVLDPLLAFRKELQENHG---VKVSVNDIVIKAVAVALRNVRQANAFWDAEKGDIVMCDSVDISIAVATEKGLMTPIIKNADQKSISAISLEVKELAQKARSGKLAPHEFQGGTFSISNLGMYPVDNFCAIINPPQAGILAVGRGNKVVEPVIGLDGIEKPSVVTKMNVTLSADHRIFDGQVGASFMSELRSNFEDVRRLLL 637          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_RICCN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia conorii GN=sucB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.939e-23
Identity = 60/202 (29.70%), Postives = 111/202 (54.95%), Query Frame = -3
Query:   83 EINCDALVKLKASFQNNNSDPN-IKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 685
            EI+   ++ L+  ++      + +K  F+   +K+   A+   P +N+  + + L  + K  ++IG+A+ T+ GL VP +++   +   E+ K +  L + A++ +L+ AD SGGT ++SN G  G     P++N P+  I+ + + E+   +  DG +   P+M + +  DHR++DG     F  + KQLIENPE LLL +
Sbjct:  197 EIDMSKVIALRNQYKEEFEKKHAVKLGFMSFFVKATIEALKLIPSVNAEIDGDDL--VYKNYYDIGVAVGTEQGLVVPVVRDADKMGFAEVEKTIGILAKQAREGKLSMADLSGGTFSISNGGVYGSLLSTPIINPPQSGILGLHKTEE-RAVVIDGKIEIRPMMYIALSYDHRIIDGKEGVSFLVKIKQLIENPEKLLLNL 395          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_RICBR (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=sucB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.939e-23
Identity = 58/202 (28.71%), Postives = 112/202 (55.45%), Query Frame = -3
Query:   83 EINCDALVKLKASFQNN-NSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 685
            EI+   ++ L+  +++       +K  F+   +++   A+   P +N+  + + L  + K  ++IG+A+ T+ GL VP +++   +   +I K +  L + A+D +L+ AD SGGT ++SN G  G     P++N P+  I+ + + E+   ++ DG +   P+M + +  DHR++DG     F  + K+LIE+PE LLL +
Sbjct:  202 EIDMSKVIALRGKYKDEFEKKHGVKLGFMSFFVRATIEALKLIPSVNAEIDGDDL--VYKNYYDIGVAVGTEQGLVVPVVRDADKMGFADIEKTIGGLAKKARDGKLSMADLSGGTFSISNGGVYGSLLSTPIINPPQSGILGLHKTEE-RVVAIDGKIEIRPMMYIALSYDHRIIDGKEAVSFLVKIKELIESPEKLLLNL 400          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_AZOVI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Azotobacter vinelandii GN=sucB PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 9.939e-23
Identity = 64/237 (27.00%), Postives = 128/237 (54.01%), Query Frame = -3
Query:   83 DKTVPLRGFQ----RTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQN--NNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 775
            +K VP+   +      +V+  S  A +  F+   E+N   +++L+A +++    +   ++  F+   +K+   A+ + P +N+  +    +++  G  +IG+A+++  GL VP ++N + +S+ EI   ++   + AK  +L   + +GGT T+SN G  G     P++N P+ AI+ M +I++ P ++ +G V   P+M + +  DHR++DG     F    K L+E+P  LLL +
Sbjct:  169 EKRVPMTRLRAKVAERLVEAQSSMAMLTTFN---EVNMKPVMELRAKYKDLFEKTHNGVRLGFMSFFVKAAVEALKRQPGVNASIDGN--DIVYHGYQDIGVAVSSDRGLVVPVLRNAEFMSLAEIEGGINEFGKKAKAGKLTIEEMTGGTFTISNGGVFGSLLSTPIVNPPQTAILGMHKIQERP-MAVNGQVVILPMMYLALSYDHRLIDGKEAVTFLVTMKDLLEDPARLLLDV 399          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_RICFE (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia felis GN=sucB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.298e-22
Identity = 59/202 (29.21%), Postives = 111/202 (54.95%), Query Frame = -3
Query:   83 EINCDALVKLKASFQNNNSDPN-IKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 685
            EI+   ++ L+  ++      + +K  F+   +K+   A+   P +N+  + + L  + K  ++IG+A+ T+ GL VP +++   +   E+ K +  L + A++ +L+ AD SGGT ++SN G  G     P++N P+  I+ + + E+   +  DG +   P+M + +  DHR++DG     F  + K+LIENPE LLL +
Sbjct:  203 EIDMSKVIALRNQYKEEFEKKHLVKLGFMSFFVKATIEALKLIPSVNAEIDGDDL--VYKNYYDIGVAVGTEQGLVVPVVRDADKMGFAEVEKAIGTLAKKAREGKLSMADLSGGTFSISNGGVYGSLLSTPIINPPQSGILGLHKTEE-RAVVIDGKIEIRPMMYIALSYDHRIIDGKEGVSFLVKIKELIENPEKLLLNL 401          
The following BLAST results are available for this feature:
BLAST of DT214584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
ODO2_PSEAE8.990e-2427.00Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARQU8.990e-2429.73Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODP2_RICBR1.533e-2329.86Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODO2_BARVB1.533e-2330.18Dihydrolipoyllysine-residue succinyltransferase co... [more]
OPD22_ARATH4.462e-2334.74Dihydrolipoyllysine-residue acetyltransferase comp... [more]
OPD21_ARATH4.462e-2332.55Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODO2_RICCN9.939e-2329.70Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_RICBR9.939e-2328.71Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_AZOVI9.939e-2327.00Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_RICFE1.298e-2229.21Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02I06_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0002b_E03_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214584 ID=DT214584; Name=DT214584; organism=Citrus sinensis; type=EST; length=843bp
ACATACAATAATATTATTATTTTGCGTGTAATTGAGAGTTATTGAAAAGT
GTAAGCTGAGGAGCAATGAAGATGCATCATCTCATTTGCAACAGAAGTAA
CTCAGGGTTTTCGATTAACTGTTTCCACTCATTGCAGAACTTTGCGACAG
TTGCTCCATCCAAAACTCTGTGATCAGCACCTATATTAACGGTCATAATT
GGTGAGGGGTACACATTTCCATCGTCTGAAAGACGTGGAACTTTCTCAAT
TCGGCCCATTGCAATGATGGCAACTTCAGGCAAGTTGAGAAGTGGCGCAC
CAAATTTTCCGCCGATTGCTCCAATATTGCTGAGAGTTATTGTTCCACCA
GAATTATCAGCTGGATTAAGCTCGTTATCCTTTGCTAATTGTTGTAACCG
TGACAGTTCCTTTGTTATCTCCAAGATGGAAAGGGACTGAACATTCTTAA
TGTTAGGTACAGCTAGACCATGTTGAGTAGCCATTGCAATTCCAATATTG
TGGGAACCTTTAAGAATGACCTCAAGTGACTCCTCATTGAAGCAACTATT
CATGAAGGGATATTTGCTCATGGCCATCGAAAGTGACTTTATCAATGATG
GAAGGAAAGTATGCTTAATGTTTGGGTCAGAATTATTATTTTGAAAAGAT
GCCTTAAGCTTCACAAGAGCATCACAATTTATCTCTTCTACATAATGAAA
ATGCGGTATTTTTGCAGCCATGGACATTGTTTTGACCATTGTTCTCTGGA
AACCCCTCAAGGGAACTGTCTTATCATCAGGGTACCATTTAACTTCAGCA
AATGTTTGTGGGTAGGTCTCTTCTTCTCCTAAAAGCTGCTCTC
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