DT214584

Overview
NameDT214584
Unique NameDT214584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12308 contig Csv1_Contig12308:85..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_STAA8 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain NCTC 8325) GN=odhB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20
Identity = 64/220 (29.09%), Postives = 111/220 (50.45%), Query Frame = -3
Query:   86 RTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQ 745
            + +++  +  A +  F+ V+  N   L K K      + D   K  F+    K+   A+ KYP +N+  + +  ++I K  ++IG+A++T  GL VP +++    +  EI  E++ L   A++ +L   D   G+ T++N G  G     P++N  + AI+ M  I   P   D   +   P+M + +  DHR++DG     F    K+LIENPE LLL+
Sbjct:  205 KKLLEVSNNTAMLTTFNEVDMTNVMELRKRKKEQFMKDHD-GTKLGFMSFFTKASVAALKKYPEVNAEIDGD--DMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 421          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_STAA3 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain USA300) GN=odhB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20
Identity = 64/220 (29.09%), Postives = 111/220 (50.45%), Query Frame = -3
Query:   86 RTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQ 745
            + +++  +  A +  F+ V+  N   L K K      + D   K  F+    K+   A+ KYP +N+  + +  ++I K  ++IG+A++T  GL VP +++    +  EI  E++ L   A++ +L   D   G+ T++N G  G     P++N  + AI+ M  I   P   D   +   P+M + +  DHR++DG     F    K+LIENPE LLL+
Sbjct:  205 KKLLEVSNNTAMLTTFNEVDMTNVMELRKRKKEQFMKDHD-GTKLGFMSFFTKASVAALKKYPEVNAEIDGD--DMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 421          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODP2_AZOVI (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Azotobacter vinelandii PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20
Identity = 60/207 (28.99%), Postives = 102/207 (49.28%), Query Frame = -3
Query:   89 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 709
            +PH    E  +   L   + + +       +K T LP L+K+ +  + + P  NS        +I K   +IG A+ T  GL VP I+NV   S+L++  E + L + A+  +L      G   T+S++G IGG    P++N PEVAI+ + +    P + D     P  ++ +++  DHRV++GA  A+F      L+ +   +LL
Sbjct:  433 VPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQP-VWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL 638          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_RALEH (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sucB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20
Identity = 62/253 (24.51%), Postives = 132/253 (52.17%), Query Frame = -3
Query:   83 EEETYPQTFAEVKWYPDDKTVPLRGFQ----RTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNN-NSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 826
            ++ + P  FA +   P+++ VP+   +      ++++ S  A +  F+   E+N   ++ L+  +++    +  +K  F+   +K+   A+ K+P +N+  +    +++  G  +IGIA+ +  GL VP ++N   +S+ +I K+++     A+D +L+  + +GGT ++SN G  G     P++N P+ AI+ +   +  P + +DG +   P+  + +  DHR++DG          K  +E+P  LLL +
Sbjct:  171 QQVSAPVDFAALGDRPEER-VPMSRLRARIAERLLQSQSTNAILTTFN---EVNMKPVMDLRNKYKDRFEKEHGVKLGFMSFFVKAAVHALKKFPLINASIDGN--DIVYHGYFDIGIAVGSPRGLVVPILRNADQMSLADIEKKIAEFGVKARDGKLSLEELTGGTFSISNGGVFGSMLSTPIINPPQSAILGVHATKDRP-VVEDGQIVIRPMNYLAMSYDHRIIDGREAVLGLVAMKDALEDPARLLLDL 416          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_MYCTU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium tuberculosis GN=sucB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.617e-20
Identity = 59/213 (27.70%), Postives = 110/213 (51.64%), Query Frame = -3
Query:  110 KTMSMAAKIPHFHYVEEINCDAL-VKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRL----SDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 733
            +++   A++   H V+      L  + KA+F        +  TFLP   K++  A+  +P +N+ +NE++ E+    + ++G A+ T+ GL  P I +   LS+  + + ++ +   A+   L P + SGGT T++NIG+ G  F  P+L  P+ A++  G I K PR+    S + ++    +  + +  DHR++DGA   +F    K  +E
Sbjct:  334 ESLQATAQLTQTHEVDMTKIVGLRARAKAAFAEREG---VNLTFLPFFAKAVIDALKIHPNINASYNEDTKEITYYDAEHLGFAVDTEQGLLSPVIHDAGDLSLAGLARAIADIAARARSGNLKPDELSGGTFTITNIGSQGALFDTPILVPPQAAMLGTGAIVKRPRVVVDASGNESIGVRSVCYLPLTYDHRLIDGADAGRFLTTIKHRLE 543          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_MYCBO (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium bovis GN=sucB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.617e-20
Identity = 59/213 (27.70%), Postives = 110/213 (51.64%), Query Frame = -3
Query:  110 KTMSMAAKIPHFHYVEEINCDAL-VKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRL----SDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 733
            +++   A++   H V+      L  + KA+F        +  TFLP   K++  A+  +P +N+ +NE++ E+    + ++G A+ T+ GL  P I +   LS+  + + ++ +   A+   L P + SGGT T++NIG+ G  F  P+L  P+ A++  G I K PR+    S + ++    +  + +  DHR++DGA   +F    K  +E
Sbjct:  334 ESLQATAQLTQTHEVDMTKIVGLRARAKAAFAEREG---VNLTFLPFFAKAVIDALKIHPNINASYNEDTKEITYYDAEHLGFAVDTEQGLLSPVIHDAGDLSLAGLARAIADIAARARSGNLKPDELSGGTFTITNIGSQGALFDTPILVPPQAAMLGTGAIVKRPRVVVDASGNESIGVRSVCYLPLTYDHRLIDGADAGRFLTTIKHRLE 543          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_STAHJ (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus haemolyticus (strain JCSC1435) GN=odhB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.029e-19
Identity = 62/220 (28.18%), Postives = 111/220 (50.45%), Query Frame = -3
Query:   86 RTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQ 745
            + +++  +  A +  F+ V+  N   L K K      + D   K  F+    K+   A+ KYP +N+  + +  ++I K  ++IG+A++T  GL VP +++    +  E+ + ++ L   A+D +L   D   G+ T++N G  G     P++N  + AI+ M  I   P   D   +   P+M + +  DHR++DG     F    K+LIE+PE LLL+
Sbjct:  206 KKLLEVSNNTAMLTTFNEVDMTNVMELRKRKKEQFIKDHD-GTKLGFMSFFTKAAVAALKKYPEVNAEIDGD--DMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAELERAIADLAVKARDKKLGLDDMVNGSFTITNGGVFGSMMSTPIINGNQAAILGMHSIITRPIAIDKDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIESPEDLLLE 422          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODP2_CAEEL (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Caenorhabditis elegans GN=F23B12.5 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19
Identity = 66/239 (27.62%), Postives = 117/239 (48.95%), Query Frame = -3
Query:   89 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALV----KLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNI--GIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFG-APLLNLPEVAIIAMGRIEKVPRLSDDGNVYPS-PIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 778
            D   +PL   ++T+ K ++ + + IPH++   EI  D L+    KL        S    K +    +IK+ ++A  + P  NS +    ++  ++ +H++   +A++T  GL  P I N  +  +  I  E+  L Q A++ +L P +  GGT T+SN+G  G       ++N P+  I+A+G       + D+   Y     M V +  DHR +DGA  A +   +K+ +E P  +LL
Sbjct:  274 DYTDIPLSNMRKTIAKRLTESKSTIPHYYLTSEIQLDTLLQVREKLNGLLAKGTSGQATKISINDFIIKASALACQRVPEANSYW----MDSFIRENHHVDVSVAVSTPAGLITPIIFNAHAKGLATIASEIVELAQRAREGKLQPHEFQGGTFTVSNLGMFGSVSDFTAIINPPQSCILAIGGASD-KLVPDEAEGYKKIKTMKVTLSCDHRTVDGAVGAVWLRHFKEFLEKPHTMLL 507          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODP2_BUCBP (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=aceF PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.291e-19
Identity = 63/226 (27.88%), Postives = 114/226 (50.44%), Query Frame = -3
Query:   89 RTMVKTMSMAAK----IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNS-CFNEESLEVILKGSH-NIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPAD-NSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 745
            RT +++     K    IPH    +E +   L   +  + ++  D + K T L  +IK++S A+  +P  N    N+++   I+   H NIGI + T  GL VP I  V   +I  I+ +L  + + A+  +LN +D    G+ T+SN+G IGG    P++  PE+AI+ + R    P  +    + P  ++ +++  DHR +DG    +F    K+++ +   L++
Sbjct:  186 RTQIRSSKNLLKSWLTIPHVTQFDESDITELENFRQKYNSDLKDKSKKLTILIFVIKAVSKALEMFPKFNGRLINKDNRIAIVLNEHINIGIVVDTDDGLLVPVINRVNKKNISSISNDLRIISERARSRKLNFSDIKEYGSFTISNLGGIGGTNFTPIIKYPELAILGISRALIKPYWNSHAFI-PKLMLPLSLSYDHRAIDGVAAVRFITFVKKMLTDIRFLMI 410          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_ECOLI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Escherichia coli (strain K12) GN=sucB PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.291e-19
Identity = 61/236 (25.85%), Postives = 124/236 (52.54%), Query Frame = -3
Query:   83 DKTVPLRGFQRTMVKTMSMA----AKIPHFHYVEEINCDALVKLKASF-QNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 775
            +K VP+   ++ + + +  A    A +  F+   E+N   ++ L+  + +       I+  F+   +K++  A+ +YP +N+  + +  +V+     ++ +A++T  GL  P +++V +L + +I K++  L    +D +L   D +GG  T++N G  G     P++N P+ AI+ M  I+  P ++ +G V   P+M + +  DHR++DG     F    K+L+E+P  LLL +
Sbjct:  176 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFN---EVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGD--DVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRP-MAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 405          
The following BLAST results are available for this feature:
BLAST of DT214584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
ODO2_STAA81.215e-2029.09Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAA31.215e-2029.09Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODP2_AZOVI2.707e-2028.99Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODO2_RALEH2.707e-2024.51Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_MYCTU4.617e-2027.70Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_MYCBO4.617e-2027.70Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAHJ1.029e-1928.18Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODP2_CAEEL1.754e-1927.62Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_BUCBP2.291e-1927.88Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODO2_ECOLI2.291e-1925.85Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02I06_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0002b_E03_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214584 ID=DT214584; Name=DT214584; organism=Citrus sinensis; type=EST; length=843bp
ACATACAATAATATTATTATTTTGCGTGTAATTGAGAGTTATTGAAAAGT
GTAAGCTGAGGAGCAATGAAGATGCATCATCTCATTTGCAACAGAAGTAA
CTCAGGGTTTTCGATTAACTGTTTCCACTCATTGCAGAACTTTGCGACAG
TTGCTCCATCCAAAACTCTGTGATCAGCACCTATATTAACGGTCATAATT
GGTGAGGGGTACACATTTCCATCGTCTGAAAGACGTGGAACTTTCTCAAT
TCGGCCCATTGCAATGATGGCAACTTCAGGCAAGTTGAGAAGTGGCGCAC
CAAATTTTCCGCCGATTGCTCCAATATTGCTGAGAGTTATTGTTCCACCA
GAATTATCAGCTGGATTAAGCTCGTTATCCTTTGCTAATTGTTGTAACCG
TGACAGTTCCTTTGTTATCTCCAAGATGGAAAGGGACTGAACATTCTTAA
TGTTAGGTACAGCTAGACCATGTTGAGTAGCCATTGCAATTCCAATATTG
TGGGAACCTTTAAGAATGACCTCAAGTGACTCCTCATTGAAGCAACTATT
CATGAAGGGATATTTGCTCATGGCCATCGAAAGTGACTTTATCAATGATG
GAAGGAAAGTATGCTTAATGTTTGGGTCAGAATTATTATTTTGAAAAGAT
GCCTTAAGCTTCACAAGAGCATCACAATTTATCTCTTCTACATAATGAAA
ATGCGGTATTTTTGCAGCCATGGACATTGTTTTGACCATTGTTCTCTGGA
AACCCCTCAAGGGAACTGTCTTATCATCAGGGTACCATTTAACTTCAGCA
AATGTTTGTGGGTAGGTCTCTTCTTCTCCTAAAAGCTGCTCTC
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