DT214584

Overview
NameDT214584
Unique NameDT214584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12308 contig Csv1_Contig12308:85..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_ECO57 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Escherichia coli O157:H7 GN=sucB PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.291e-19
Identity = 61/236 (25.85%), Postives = 124/236 (52.54%), Query Frame = -3
Query:   83 DKTVPLRGFQRTMVKTMSMA----AKIPHFHYVEEINCDALVKLKASF-QNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 775
            +K VP+   ++ + + +  A    A +  F+   E+N   ++ L+  + +       I+  F+   +K++  A+ +YP +N+  + +  +V+     ++ +A++T  GL  P +++V +L + +I K++  L    +D +L   D +GG  T++N G  G     P++N P+ AI+ M  I+  P ++ +G V   P+M + +  DHR++DG     F    K+L+E+P  LLL +
Sbjct:  176 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFN---EVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGD--DVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRP-MAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 405          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODP2_RAT (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Rattus norvegicus GN=Dlat PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.993e-19
Identity = 59/230 (25.65%), Postives = 123/230 (53.48%), Query Frame = -3
Query:   89 VPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSH--NIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIE-KVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 766
            +P+   +R + + +  + + IPH++   ++N   ++ ++    N   +   K +    +IK+ ++A  K P  NS +    ++ +++ +H  ++ +A++T  GL  P + N     +  I  ++  L   A++ +L P +  GGT T+SN+G  G K  + ++N P+  I+A+G  E K+    ++     + +M+V +  DHRV+DGA  A++  E+K+ +E P  +LL
Sbjct:  408 IPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGEVLLVRKEL-NKMLEGKGKISVNDFIIKASALACLKVPEANSSW----MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLETIASDVVSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLIPADNEKGFDVASVMSVTLSCDHRVVDGAVGAQWLAEFKKYLEKPVTMLL 632          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODP2_MOUSE (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dlat PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.909e-19
Identity = 59/230 (25.65%), Postives = 123/230 (53.48%), Query Frame = -3
Query:   89 VPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSH--NIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIE-KVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 766
            +P+   +R + + +  + + IPH++   ++N   ++ ++    N   +   K +    +IK+ ++A  K P  NS +    ++ +++ +H  ++ +A++T  GL  P + N     +  I  ++  L   A++ +L P +  GGT T+SN+G  G K  + ++N P+  I+A+G  E K+    ++     + +M+V +  DHRV+DGA  A++  E+K+ +E P  +LL
Sbjct:  418 IPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGEVLLVRKEL-NKMLEGKGKISVNDFIIKASALACLKVPEANSSW----MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLETIASDVVSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLIPADNEKGFDVASVMSVTLSCDHRVVDGAVGAQWLAEFKKYLEKPITMLL 642          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODP2_PSEAE (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Pseudomonas aeruginosa GN=aceF PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.105e-19
Identity = 58/207 (28.02%), Postives = 105/207 (50.72%), Query Frame = -3
Query:   89 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 709
            +PH    ++ +   +   + + +       +K T LP L+K+ +  + + P  NS        +I K   +IG A+ T  GL VP I++V   S+L++  E + L   A++ +L+     G   T+S++G IGG    P++N PEVAI+ + +    P + D     P  ++ +++  DHRV++GA  A+F     +L+ +   LLL
Sbjct:  342 VPHVTQFDQSDITDMEAFRVAQKAAAEKAGVKLTVLPILLKACAHLLKELPDFNSSLAPSGKALIRKKYVHIGFAVDTPDGLLVPVIRDVDRKSLLQLAAEAADLADKARNKKLSADAMQGACFTISSLGHIGGTGFTPIVNAPEVAILGVSKATMQP-VWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGELLADIRTLLL 547          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODPX_MOUSE (Pyruvate dehydrogenase protein X component, mitochondrial OS=Mus musculus GN=Pdhx PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.137e-18
Identity = 59/226 (26.11%), Postives = 119/226 (52.65%), Query Frame = -3
Query:  104 VPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPS----PIMTVNIGADHRVLDGATVAKFCNEWKQLIENP 766
            +P    +R + K ++ + + +PH +   + +  A++K++     ++    IK +    +I++ ++ + + P +N  ++ E  + +   S +I +A+AT  GL  P IK+  +  I EI   +  L + A+D +L P +  GG+ ++SN+G  G    A ++N P+  I+A+GR   V +L++D    P      ++TV + +D RV+D     +F   +K  +ENP
Sbjct:  278 IPASNIRRVIAKRLTESKSTVPHAYATADCDLGAVLKVRRDLVKDD----IKVSVNDFIIRAAAVTLKQMPGVNVTWDGEGPKQL--PSVDISVAVATDKGLITPIIKDAAAKGIQEIADSVKVLSKKARDGKLMPEEYQGGSFSISNLGMFGIDEFAAVINPPQACILAVGRFRPVLKLTEDEEGNPQLQQHQLITVTMSSDSRVVDDELATRFLETFKANLENP 497          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODP2_HUMAN (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLAT PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.137e-18
Identity = 58/230 (25.22%), Postives = 123/230 (53.48%), Query Frame = -3
Query:   89 VPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSH--NIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIE-KVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 766
            +P+   +R + + +  + + IPH++   ++N   ++ ++    N   +   K +    +IK+ ++A  K P  NS +    ++ +++ +H  ++ +A++T  GL  P + N     +  I  ++  L   A++ +L P +  GGT T+SN+G  G K  + ++N P+  I+A+G  E K+    ++     + +M+V +  DHRV+DGA  A++  E+++ +E P  +LL
Sbjct:  423 IPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKEL-NKILEGRSKISVNDFIIKASALACLKVPEANSSW----MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 647          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_BUCBP (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sucB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.485e-18
Identity = 59/220 (26.82%), Postives = 114/220 (51.82%), Query Frame = -3
Query:   83 MVKTMSMAAKIPHFHYVEEINCDALVKLKASF-QNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 739
            ++ T +  A +  F+   E+N  +++ L+  + +       IK   +   +K++  A+  +P +N+  + +  E+I     +I IA++T  GL  P +KN   +S+ EI  ++    +  K+++L   D  GG  T++N G  G  F  PL+N P+ AI+ M  I K P + D+ N+   P+M + +  DHR++DG     F  + K+ +E+   ++L +
Sbjct:  197 LLSTKNNTASLTTFN---EVNMQSILNLRRKYGELFKQKHGIKLGLMSFYVKAVIEALKIFPEINASIDND--EIIYYNYFDISIAISTPRGLVTPVLKNADLMSMAEIEIKIKDFSEKGKNSKLTIDDLIGGNFTITNGGVFGSLFSTPLINPPQSAILGMHAIHKRPVIVDE-NIEVHPMMYLALSYDHRLIDGKESVGFLLKIKEFLEDFSRIVLNI 410          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODPX_BOVIN (Pyruvate dehydrogenase protein X component OS=Bos taurus GN=PDHX PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 3.309e-18
Identity = 59/226 (26.11%), Postives = 119/226 (52.65%), Query Frame = -3
Query:  104 VPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDD--GN--VYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENP 766
            +P    +R + K ++ + + IPH +   + +  A++  + +   ++    IK +    +IK+ ++ + + P +N+ ++ E  + +   S +I +A+AT  GL  P IK+  +  + EI   +  L + A+D +L P +  GG+ ++SN+G  G      ++N P+  I+A+GR   V +L+ D  GN  +    ++TV + +D RV+D     +F   +K  +ENP
Sbjct:  278 IPASNIRRVIAKRLTESKSTIPHAYATTDCDLGAVLTARQNLVRDD----IKVSVNDFIIKAAAVTLKQMPNVNASWDGEGAKQL--PSIDISVAVATDRGLITPVIKDAAAKGLQEIADSVKALSKKARDGKLLPEEYQGGSFSISNLGMFGIDEFTAVINPPQACILAVGRFRPVLKLTQDEEGNAQLQQRQLITVTMSSDSRVVDDELATRFLESFKANLENP 497          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODPX_HUMAN (Pyruvate dehydrogenase protein X component, mitochondrial OS=Homo sapiens GN=PDHX PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 5.644e-18
Identity = 59/226 (26.11%), Postives = 119/226 (52.65%), Query Frame = -3
Query:  104 VPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDD--GN--VYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENP 766
            +P    +R + K ++ + + +PH +   + +  A++K++     ++    IK +    +IK+ ++ + + P +N  ++ E  + +     +I +A+AT  GL  P IK+  +  I EI   +  L + A+D +L P +  GG+ ++SN+G  G      ++N P+  I+A+GR   V +L++D  GN  +    ++TV + +D RV+D     +F   +K  +ENP
Sbjct:  278 IPASNIRRVIAKRLTESKSTVPHAYATADCDLGAVLKVRQDLVKDD----IKVSVNDFIIKAAAVTLKQMPDVNVSWDGEGPKQL--PFIDISVAVATDKGLLTPIIKDAAAKGIQEIADSVKALSKKARDGKLLPEEYQGGSFSISNLGMFGIDEFTAVINPPQACILAVGRFRPVLKLTEDEEGNAKLQQRQLITVTMSSDSRVVDDELATRFLKSFKANLENP 497          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ACOC_BACSU (Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system OS=Bacillus subtilis GN=acoC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.371e-18
Identity = 50/176 (28.41%), Postives = 93/176 (52.84%), Query Frame = -3
Query:   89 KHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 616
            K T    + ++  +A+  +P +NS +  E   +I     ++G+A+A ++GL VP I++ + LS++E+ + +S   + A++      +  G T +++N+GA G +   P+LN PE  I+ +G     P    +  +  S I+ +++  DHR  DGA  A F    K  +E P  L+L
Sbjct:  226 KLTITHFVSRAAVLALQAHPVLNSFYQNE--RIITHPHVHLGMAVALENGLVVPVIRHAEKLSLIELAQSISENAKKAREGRAGSEELQGSTFSITNLGAFGVEHFTPILNPPETGILGIGASYDTPVYQGE-EIVRSTILPLSLTFDHRACDGAPAAAFLKAMKTYLEEPAALIL 398          
The following BLAST results are available for this feature:
BLAST of DT214584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
ODO2_ECO572.291e-1925.85Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODP2_RAT2.993e-1925.65Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_MOUSE3.909e-1925.65Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_PSEAE5.105e-1928.02Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODPX_MOUSE1.137e-1826.11Pyruvate dehydrogenase protein X component, mitoch... [more]
ODP2_HUMAN1.137e-1825.22Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODO2_BUCBP1.485e-1826.82Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODPX_BOVIN3.309e-1826.11Pyruvate dehydrogenase protein X component OS=Bos ... [more]
ODPX_HUMAN5.644e-1826.11Pyruvate dehydrogenase protein X component, mitoch... [more]
ACOC_BACSU7.371e-1828.41Dihydrolipoyllysine-residue acetyltransferase comp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02I06_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0002b_E03_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214584 ID=DT214584; Name=DT214584; organism=Citrus sinensis; type=EST; length=843bp
ACATACAATAATATTATTATTTTGCGTGTAATTGAGAGTTATTGAAAAGT
GTAAGCTGAGGAGCAATGAAGATGCATCATCTCATTTGCAACAGAAGTAA
CTCAGGGTTTTCGATTAACTGTTTCCACTCATTGCAGAACTTTGCGACAG
TTGCTCCATCCAAAACTCTGTGATCAGCACCTATATTAACGGTCATAATT
GGTGAGGGGTACACATTTCCATCGTCTGAAAGACGTGGAACTTTCTCAAT
TCGGCCCATTGCAATGATGGCAACTTCAGGCAAGTTGAGAAGTGGCGCAC
CAAATTTTCCGCCGATTGCTCCAATATTGCTGAGAGTTATTGTTCCACCA
GAATTATCAGCTGGATTAAGCTCGTTATCCTTTGCTAATTGTTGTAACCG
TGACAGTTCCTTTGTTATCTCCAAGATGGAAAGGGACTGAACATTCTTAA
TGTTAGGTACAGCTAGACCATGTTGAGTAGCCATTGCAATTCCAATATTG
TGGGAACCTTTAAGAATGACCTCAAGTGACTCCTCATTGAAGCAACTATT
CATGAAGGGATATTTGCTCATGGCCATCGAAAGTGACTTTATCAATGATG
GAAGGAAAGTATGCTTAATGTTTGGGTCAGAATTATTATTTTGAAAAGAT
GCCTTAAGCTTCACAAGAGCATCACAATTTATCTCTTCTACATAATGAAA
ATGCGGTATTTTTGCAGCCATGGACATTGTTTTGACCATTGTTCTCTGGA
AACCCCTCAAGGGAACTGTCTTATCATCAGGGTACCATTTAACTTCAGCA
AATGTTTGTGGGTAGGTCTCTTCTTCTCCTAAAAGCTGCTCTC
back to top