DT214584

Overview
NameDT214584
Unique NameDT214584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12308 contig Csv1_Contig12308:85..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODP2_YEAST (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Saccharomyces cerevisiae GN=PDA2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.257e-17
Identity = 60/211 (28.44%), Postives = 113/211 (53.55%), Query Frame = -3
Query:   89 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGG-KFGAPLLNLPEVAIIAMGRIEKV---PRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 709
            IP +    +I+   L+KL+ S  N  ++   K +    L+K++++A  + P  N+ +      +    + ++ +A+AT  GL  P +KN ++  + +I+ E+  L + A+ N+L P +  GGTI +SN+G          ++N P+  I+A+  +E+V      +++G  + + + T+    DHR +DGA  A+F  E K +IENP  +LL
Sbjct:  274 IPSYIVSSKISISKLLKLRQSL-NATANDKYKLSINDLLVKAITVAAKRVPDANAYWLPNENVIRKFKNVDVSVAVATPTGLLTPIVKNCEAKGLSQISNEIKELVKRARINKLAPEEFQGGTICISNMGMNNAVNMFTSIINPPQSTILAIATVERVAVEDAAAENGFSFDNQV-TITGTFDHRTIDGAKGAEFMKELKTVIENPLEMLL 482          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_BUCAI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=sucB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.801e-17
Identity = 51/212 (24.06%), Postives = 111/212 (52.36%), Query Frame = -3
Query:  107 MVKTMSMAAKIPHFHYVEEINCDALVKLKASF-QNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIEN 739
            ++ + +  A +  FH   E+N   ++ L+  + ++     N++  F+   +K++  A+  +P +N+  ++   +++   + +I IA++T  GL  P I+N  ++++ EI K++         N++N  +  GG  T++N G  G     P++N P+ AI+ M  I++ P +  +G +   P+M + +  DHR++DG     F    K ++E+
Sbjct:  207 LLDSKNNTAMLTTFH---EVNMKPIILLRKKYGEDFEKKHNVRIGFMSFFVKAVIQALKNFPEINAYIDQT--DIVFYKNFDISIAISTPRGLITPVIRNADTMTMAEIEKKIKDFSIKGLQNKINIKELMGGNFTITNGGVFGSLMSTPIINPPQTAILGMHVIQERP-VVVNGQIKILPMMYLALSYDHRLIDGKESVGFLINIKNILED 412          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: ODO2_BUCAP (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Buchnera aphidicola subsp. Schizaphis graminum GN=sucB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.371e-16
Identity = 48/220 (21.82%), Postives = 117/220 (53.18%), Query Frame = -3
Query:   83 MVKTMSMAAKIPHFHYVEEINCDALVKLKASF-QNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 739
            +++T +  A +  F+   E+N   ++ L+  + +       ++  F+P  +K++  ++ K+P +N+  ++   +++   + ++ IA++T  G+  P ++N  ++S+ +I K++        +N++   +  GG  T++N G  G     P++N P+ AI+ M  I++ P ++ +G V   P+M + +  DHR++DG     F    K ++E+   +++ +
Sbjct:  180 LLETKNNTAMLTTFN---EVNMQPIISLRKKYGEFFEKKHGVRIGFMPFFVKAVVESLKKFPEINASIDKN--DIVYYKNIDVSIAVSTPRGVITPVLRNADNMSMADIEKKIKEFSIKGIENKIKIEELIGGNFTITNGGIFGSLMSTPIINPPQSAILGMHLIKERP-MAINGKVKILPMMYLALSYDHRLIDGKESVSFLVTIKNILEDFNRIIINV 393          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: Y1564_DICDI (Pyruvate dehydrogenase complex subunit homolog DDB_G0271564, mitochondrial OS=Dictyostelium discoideum GN=pdhX PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.537e-15
Identity = 50/179 (27.93%), Postives = 92/179 (51.40%), Query Frame = -3
Query:  233 VPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPR 766
            +P    +R +   +S + + +PHF+   E   D ++ ++ S   N     +K +    ++++ ++A+   P  NS +++E  E IL  + +I  A++T  GL  P I N     +L I+ E  +L   A+D +L P +  GGT ++SN+G  G      ++N P+  I+A+G   KV R
Sbjct:  132 IPNNNIRRVIATKLSQSKQQVPHFYMTVECELDNVLAMRKSMPEN-----VKISVNDFVLRACALALRDNPQANSKWSDEHGEAILNPTVDISFAVSTDRGLITPIITNTDKKQLLAISNESKQLALKARDGKLKPEEFIGGTFSVSNLGMFGITSFNAIINYPQAGILAIGTGRKVLR 305          
BLAST of DT214584 vs. ExPASy Swiss-Prot
Match: KGD_MYCVP (2-oxoglutarate decarboxylase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=kgd PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12
Identity = 71/262 (27.10%), Postives = 116/262 (44.27%), Query Frame = -3
Query:  101 EEETYP----QTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNN-NSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNE-ESLEVILKGSH-NIGIAMAT-----QHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIE--------KVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPE 826
            EE+T P    +T A      DD+T  LRG    +VK MS +  +P    V  I   A++  +    N+       K +F   L  ++  A+ K+P MN  F E +   V +  +H N+G+A+       +  L V  IKN +++   +       + + A+D +L   D +G TI+L+N G IG     P L   + AI+  G +E           R+++ G      +MT+    DHR++ GA    F      L+ + E
Sbjct:   97 EEKTSPAPKAKTAAPAGVSDDDETQVLRGAAAAVVKNMSASLDVPTATSVRAIPAKAMIDNRIVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAEIDGKPVAVTPAHTNLGLAIDLPGKDGKRSLVVAAIKNCETMHFGQFIAAYEDIVRRARDGKLTAEDFAGVTISLTNPGTIGTVHSVPRLMKGQGAIVGAGAMEYPAEFQGASEERIAELG---VGKLMTLTSTYDHRIIQGAESGDFLRTIHTLLLDDE 355          
The following BLAST results are available for this feature:
BLAST of DT214584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
ODP2_YEAST1.257e-1728.44Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODO2_BUCAI2.801e-1724.06Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BUCAP2.371e-1621.82Dihydrolipoyllysine-residue succinyltransferase co... [more]
Y1564_DICDI1.537e-1527.93Pyruvate dehydrogenase complex subunit homolog DDB... [more]
KGD_MYCVP7.894e-1227.102-oxoglutarate decarboxylase OS=Mycobacterium vanb... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02I06_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0002b_E03_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214584 ID=DT214584; Name=DT214584; organism=Citrus sinensis; type=EST; length=843bp
ACATACAATAATATTATTATTTTGCGTGTAATTGAGAGTTATTGAAAAGT
GTAAGCTGAGGAGCAATGAAGATGCATCATCTCATTTGCAACAGAAGTAA
CTCAGGGTTTTCGATTAACTGTTTCCACTCATTGCAGAACTTTGCGACAG
TTGCTCCATCCAAAACTCTGTGATCAGCACCTATATTAACGGTCATAATT
GGTGAGGGGTACACATTTCCATCGTCTGAAAGACGTGGAACTTTCTCAAT
TCGGCCCATTGCAATGATGGCAACTTCAGGCAAGTTGAGAAGTGGCGCAC
CAAATTTTCCGCCGATTGCTCCAATATTGCTGAGAGTTATTGTTCCACCA
GAATTATCAGCTGGATTAAGCTCGTTATCCTTTGCTAATTGTTGTAACCG
TGACAGTTCCTTTGTTATCTCCAAGATGGAAAGGGACTGAACATTCTTAA
TGTTAGGTACAGCTAGACCATGTTGAGTAGCCATTGCAATTCCAATATTG
TGGGAACCTTTAAGAATGACCTCAAGTGACTCCTCATTGAAGCAACTATT
CATGAAGGGATATTTGCTCATGGCCATCGAAAGTGACTTTATCAATGATG
GAAGGAAAGTATGCTTAATGTTTGGGTCAGAATTATTATTTTGAAAAGAT
GCCTTAAGCTTCACAAGAGCATCACAATTTATCTCTTCTACATAATGAAA
ATGCGGTATTTTTGCAGCCATGGACATTGTTTTGACCATTGTTCTCTGGA
AACCCCTCAAGGGAACTGTCTTATCATCAGGGTACCATTTAACTTCAGCA
AATGTTTGTGGGTAGGTCTCTTCTTCTCCTAAAAGCTGCTCTC
back to top