DT214573

Overview
NameDT214573
Unique NameDT214573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214573 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 50/196 (25.51%), Postives = 85/196 (43.37%), Query Frame = -1
Query:   90 ATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTV-----PSAGYGEAFALEFIISFNLMFXXXXXXXXXXXVGELAGIAVGATVMLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAV 662
            A A V      S  L+  A ++GLA+  +     HISGAH+NPAVT+A   ++        +YI AQ    +  A  L G+  P   G +        +    E F +EFI++F ++                +  ++G        ++ P     +NP R+LGP+  +N + + W+Y   P++G +     Y  +
Sbjct:   85 AAAGVGVGASVSSVLLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTDPMKKFMGNSAASIGCAYSACCFVSMP----YLNPARSLGPSFVLNKWDSHWVYWFGPLVGGMASGLVYEYI 276          
BLAST of DT214573 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 53/183 (28.96%), Postives = 80/183 (43.72%), Query Frame = -1
Query:  108 GLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHP----IMGGGVTVPSAGY--GEAFALEFIISFNLMFXXXXXXXXXXXVGE-----LAGIAVGATVMLNILIAGPSTGGSMNPVRTLGPAVAVN---NYKAIWIYLTAPILGALCGA 614
            G+A + G  +  ++  T  ISG H+NPAVT      +         Y+  Q + ++C A  +KG F P     +GGG    + GY  G     E I +F L++             +     LA + +G  V L  L   P TG  +NP R+LG A+  N   ++   WI+   P +GA   A
Sbjct:   90 GIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKG-FQPTPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAA 271          
BLAST of DT214573 vs. ExPASy Swiss-Prot
Match: GLPF_SHIFL (Glycerol uptake facilitator protein OS=Shigella flexneri GN=glpF PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 62/205 (30.24%), Postives = 88/205 (42.93%), Query Frame = -1
Query:   99 GLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIF----------HPIMGGGVTV------------PSAGYGEAFALEFIISFNLM--FXXXXXXXXXXXVGELAGIAVGATVMLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIW---------------IYLTAPILGALCGAGTY 596
            GL V + I  T  +SGAHLNPAVTIA      F  + V  +I +Q+  + CAA  + G++          H I+ G V              P   + +AFA+E +I+  LM               G LA + +G  + +     GP TG +MNP R  GP V    + A W               + L +PI+GA+ GA  Y
Sbjct:   49 GLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFA--WLAGWGNVAFTGGRDIPYFLVPLFSPIVGAIVGAFAY 251          
BLAST of DT214573 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 54/203 (26.60%), Postives = 84/203 (41.38%), Query Frame = -1
Query:   81 TQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTVPSA-------GYGEAF---ALEFIISFNLMFXXXXXXXXXXXVGE-------LAGIAVGATVMLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLP 638
            T  +  L+  A +    +   +L    +SG H+NPAVT A+A            Y  +Q++ +  A  +L      +   G  VP+        G+G A     L F++ + +              G+       L  +AVG T    +L AG  TG SMNP R+ GPAV   ++K   +Y   P++GA   A  Y  +  P
Sbjct:   52 TSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLN-----LFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARSFGPAVVSGHFKNQAVYWAGPMVGAAVAALVYQIMACP 249          
BLAST of DT214573 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 57/208 (27.40%), Postives = 88/208 (42.31%), Query Frame = -1
Query:   90 FAGTATAIVNQKTQGSET-----LIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTVP--SAGYG----EAFALEFIISFNLMFXXXXXXXXXXXV--GELAGIAVGATVMLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAV 674
            FAG  + +   K  G        L+  + S   A+ V +    ++SG H+NPAVT       +       +Y  AQ++ ++ A   LK     +  GG+     S  YG     A   E +++F L++              G +A +A+G  V  NIL+ G   G SMNP  + GPAV    +   W+Y   P +GA   A  Y  +
Sbjct:   35 FAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLK-----VSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIVYDTI 237          
BLAST of DT214573 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 53/184 (28.80%), Postives = 81/184 (44.02%), Query Frame = -1
Query:  108 LIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALK---GIFHPIMGGGVTVPSAGY--GEAFALEFIISFNLMFXXXXXXXXXXXVGE-----LAGIAVGATVMLNILIAGPSTGGSMNPVRTLGPAVAVNNYKA---IWIYLTAPILGALCGA 620
            L+G++ + G  + +++  T  ISG H+NPAVT                Y+ AQ + + C    +K     ++   GGG  + S GY  G     E I +F L++             +     LA + +G +V +  L   P TG  +NP R+ G AV  NN KA    WI+   P +GA   A
Sbjct:   79 LLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGGGANMLSDGYNVGVGVGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGAAIAA 262          
BLAST of DT214573 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 51/194 (26.29%), Postives = 82/194 (42.27%), Query Frame = -1
Query:   90 GSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGI---FHPIMGGGVTVPSAGY--GEAFALEFIISFNLMFXXXXXXXXXXXVGE-----LAGIAVGATVMLNILIAGPSTGGSMNPVRTLGPAVAVNN---YKAIWIYLTAPILGALCGAGTYSAV 632
            G+  + G+A + G  +  ++  T  +SG H+NPAVT      +         Y+  Q + ++C A  +K      +   GGG    S GY  G+    E + +F L++             +     LA + +G  V L  L   P TG  +NP R+LG A+  +N   +   WI+   P  GA   A  +  V
Sbjct:   91 GTVGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVFSATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVV 284          
BLAST of DT214573 vs. ExPASy Swiss-Prot
Match: GLPF_ECOLI (Glycerol uptake facilitator protein OS=Escherichia coli (strain K12) GN=glpF PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 62/205 (30.24%), Postives = 87/205 (42.44%), Query Frame = -1
Query:   99 GLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIF----------HPIMGGGVTV------------PSAGYGEAFALEFIISFNLM--FXXXXXXXXXXXVGELAGIAVGATVMLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIW---------------IYLTAPILGALCGAGTY 596
            GL V + I  T  +SGAHLNPAVTIA      F  + V  +I +Q+  + CAA  + G++          H I+ G V              P   + +AFA+E +I+  LM               G LA + +G  + +     GP TG +MNP R  GP V    + A W               + L  PI+GA+ GA  Y
Sbjct:   49 GLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFA--WLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAY 251          
BLAST of DT214573 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 62/205 (30.24%), Postives = 87/205 (42.44%), Query Frame = -1
Query:   99 GLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIF----------HPIMGGGVTV------------PSAGYGEAFALEFIISFNLM--FXXXXXXXXXXXVGELAGIAVGATVMLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIW---------------IYLTAPILGALCGAGTY 596
            GL V + I  T  +SGAHLNPAVTIA      F  + V  +I +Q+  + CAA  + G++          H I+ G V              P   + +AFA+E +I+  LM               G LA + +G  + +     GP TG +MNP R  GP V    + A W               + L  PI+GA+ GA  Y
Sbjct:   49 GLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFA--WLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAY 251          
BLAST of DT214573 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 62/205 (30.24%), Postives = 87/205 (42.44%), Query Frame = -1
Query:   99 GLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIF----------HPIMGGGVTV------------PSAGYGEAFALEFIISFNLM--FXXXXXXXXXXXVGELAGIAVGATVMLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIW---------------IYLTAPILGALCGAGTY 596
            GL V + I  T  +SGAHLNPAVTIA      F  + V  +I +Q+  + CAA  + G++          H I+ G V              P   + +AFA+E +I+  LM               G LA + +G  + +     GP TG +MNP R  GP V    + A W               + L  PI+GA+ GA  Y
Sbjct:   49 GLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFA--WLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAY 251          
The following BLAST results are available for this feature:
BLAST of DT214573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
BIB_DROME1.539e-1225.51Neurogenic protein big brain OS=Drosophila melanog... [more]
PIP14_ARATH2.010e-1228.96Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
GLPF_SHIFL2.010e-1230.24Glycerol uptake facilitator protein OS=Shigella fl... [more]
TIP51_MAIZE2.626e-1226.60Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
TIP13_ARATH2.626e-1227.40Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
PIP26_ARATH2.626e-1228.80Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP16_MAIZE2.626e-1226.29Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
GLPF_ECOLI2.626e-1230.24Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECOL62.626e-1230.24Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO572.626e-1230.24Glycerol uptake facilitator protein OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_3G01_b2 Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10-2 Citrus sinensis cDNA clone UCRCS10-3G01-N1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214573 ID=DT214573; Name=DT214573; organism=Citrus sinensis; type=EST; length=701bp
ACTTCCGTGACAGTGTTGATCAATCACCTTCTGAAGCTGCCCTTTGTGGC
AGGCTTTGCGAGGGCATCGGTGTCTTCCTCCGGTAGCTTGACAGCAGAAT
AAGTTCCTGCACCGCATAATGCCCCAAGAATGGGGGCGGTCAGGTAGATC
CATATGGCCTTGTAATTGTTTACTGCTACGGCTGGCCCCAGTGTTCTTAC
TGGATTCATCGAGCCACCCGTTGATGGCCCGGCTATGAGTATGTTGAGCA
TGACAGTTGCTCCCACCGCGATTCCCGCCAACTCGCCCACAGCTCTCGTG
TCGGTGGCTACAGCAGTGACAACAAACATGAGATTGAAGCTAATTATGAA
TTCCAAAGCAAAAGCTTCACCATATCCTGCTGAAGGAACTGTGACTCCCC
CTCCCATAATTGGATGAAAAATTCCCTTTAAGGCAAATGCAGCACATAGT
GATGCCATTATTTGTGCTCCAATATAAACGGGTACATGTTTCCATGGAAA
GTGCTTTAGGGCAGCAAAGGCAATGGTGACAGCAGGGTTGAGATGGGCGC
CGGAGATGTGACCGGTCGATAAGATGACGACCATGACAGCGAGACCGGTG
GAGCCGGCGAGGCCAATTAGGGTTTCTGAGCCTTGTGTTTTCTGGTTCAC
AATAGCTGTGGCTGTCCCAGCAAAATATTAGCATAAGTGTGCCCACAAAT
T
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