DT214569
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28 Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = -2 Query: 145 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 507 M VW P K FET SYLPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL ++ K +P +++R++ FD RQVQ F+ +PP Sbjct: 44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28 Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = -2 Query: 145 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 582 +A P + S +N R M VW P K FET S+LPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ +P +++R++ FD RQVQ F+ +PP Sbjct: 20 AATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28 Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = -2 Query: 145 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 507 M VW P K FET S+LPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 160
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28 Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = -2 Query: 145 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 507 M VW P K FET S+LPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28 Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = -2 Query: 145 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 507 M VW P K FET S+LPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ +P +++R++ FD RQVQ F+ +PP Sbjct: 44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 170
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.460e-24 Identity = 49/112 (43.75%), Postives = 73/112 (65.18%), Query Frame = -2 Query: 145 SYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 462 SYLPPL+DE + K+++Y++ + W PCLEF ++ + ++ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 113
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.756e-22 Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = -2 Query: 148 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 480 +++ETLSYLPPLSD+ + ++I Y++R G+IP +EF + YWTMWKLP++ T +VL EV E + EYP+ ++R++GFDN +Q Q +SFI KP Sbjct: 8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSDATTC------------YWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.536e-21 Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = -2 Query: 148 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 480 K++ETLSYLPPLSD+ + +++ Y++ G+IP +EFE K HH WT+WKLP++ + A +VL EV E + EY ++R++GFDN +Q Q +SFI KP Sbjct: 8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEFE--KDPTPELHH----------WTLWKLPLFNASSAQEVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSFIVYKP 106
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.650e-21 Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = -2 Query: 148 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 480 +++ETLSYLPPL+D+ + K++ +L+ G+IP +EFE + E H +WTMWKLP +G A +VL EV E + E P+ ++R+IGFDN +Q Q +SFI KP Sbjct: 8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEEDP---QPETH---------FWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKP 106
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3) HSP 1 Score: 100.908 bits (250), Expect = 7.380e-21 Identity = 48/111 (43.24%), Postives = 66/111 (59.46%), Query Frame = -2 Query: 148 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 480 ++FET SYLPPLSD + +I Y+I G+ P +EF H +P + YWTMWKLP++ C QVL EV E + EY ++R+ GFDN +Q Q +SFI +P Sbjct: 10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFN---------EHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVHRP 108 The following BLAST results are available for this feature:
BLAST of DT214569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
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Sequences
The
following sequences are available for this feature:
EST sequence >DT214569 ID=DT214569; Name=DT214569; organism=Citrus sinensis; type=EST; length=730bpback to top |