DT214566

Overview
NameDT214566
Unique NameDT214566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 39/124 (31.45%), Postives = 71/124 (57.26%), Query Frame = -2
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP+         ++ A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  311 KYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA1_PELFA (Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 41/130 (31.54%), Postives = 71/130 (54.62%), Query Frame = -2
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT +        + A   + N+T+I E   R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++    TA
Sbjct:  311 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTAVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLVALEKDYEEVGAETA 440          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 39/124 (31.45%), Postives = 71/124 (57.26%), Query Frame = -2
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP+         ++ A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  311 KYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 39/124 (31.45%), Postives = 71/124 (57.26%), Query Frame = -2
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP+         ++ A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  311 KYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.882e-16
Identity = 41/130 (31.54%), Postives = 71/130 (54.62%), Query Frame = -2
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + N+T+I E   R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++    TA
Sbjct:  311 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA 440          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.882e-16
Identity = 40/124 (32.26%), Postives = 70/124 (56.45%), Query Frame = -2
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    ++RG +  K+V+  + N++ K +  FV+W P   K  +   PPT         +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 434          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA_DAUCA (Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 41/124 (33.06%), Postives = 70/124 (56.45%), Query Frame = -2
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +    PT         ++ A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  311 KYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQAPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDTKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA3_HOMAM (Tubulin alpha-3 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 40/124 (32.26%), Postives = 69/124 (55.65%), Query Frame = -2
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PPT +          A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 434          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.210e-16
Identity = 45/130 (34.62%), Postives = 72/130 (55.38%), Query Frame = -2
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            +Y+    MFRG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         +  A   I NST+I E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++    TA
Sbjct:  311 KYMACCMMFRGDVVPKDVNAAVATIKTKRTIQFVDWSPG-FKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIETA 439          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA1B_PANTR (Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.210e-16
Identity = 40/124 (32.26%), Postives = 70/124 (56.45%), Query Frame = -2
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PPT         ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFVLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434          
The following BLAST results are available for this feature:
BLAST of DT214566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
TBA3_ELEIN1.441e-1631.45Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA1_PELFA1.441e-1631.54Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA1_ORYSJ1.441e-1631.45Tubulin alpha-1 chain OS=Oryza sativa subsp. japon... [more]
TBA1_HORVU1.441e-1631.45Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ... [more]
TBA2_PELFA1.882e-1631.54Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA1_HOMAM1.882e-1632.26Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]
TBA_DAUCA2.458e-1633.06Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 S... [more]
TBA3_HOMAM2.458e-1632.26Tubulin alpha-3 chain OS=Homarus americanus PE=2 S... [more]
TBA_EUPVA3.210e-1634.62Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1[more]
TBA1B_PANTR3.210e-1632.26Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_22C01_b2 Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10-2 Citrus sinensis cDNA clone UCRCS10-22C01-E2-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214566 ID=DT214566; Name=DT214566; organism=Citrus sinensis; type=EST; length=861bp
GATTCCAAAGCAAATTGAAGTATCATATTTAAACATACAAGGTTCCAAGA
AAATTAAACAATAAGGGGAAAAGGACGAAAAGATGAAGAAACTATTTCAA
TTAGGCTTCTCCGCTTCTATCTAGATCATGACAAGAAACCAGCAACTGGA
AGTTGAGGTTCCAAAGAATTGCTTCAGAAGCAATCCACCCATCAAAATTA
TTGCTGATAGTCTTCATCAAACTGTTCCTCTTCATCATCATATCCTTCCT
CATCAGCTGTTGCATCTTGGTATTGCTGATACTCTGAAACCAAATCATTC
ATGTTGCTCTCTGCCTCAGTGAACTCCATCTCATCCATACCTTCCCCAGT
ATACCAATGTAAGAAAGCTTTTCTCCTAAACATGGCAGTAAATTGTTCAC
TCACACGCCTGAACATTTCCTGGATAGATGTGGAGTTCCCAATGAACGTG
GAGGCCATCTTCAAACCAGTGGGTGGGATATCACAAACGGTAGACTTCAC
ATTGTTGGGGATCCACTCAACAAAGTATGAGGAGTTCTTGTTCTGAACAT
TCAGCATTTGCTCATCTACTTCCTTGGTGCTCATCTTACCACGGAACATG
GCTGATGCTGTTAGATAGCGGCGTGAGTTTTGAACCTCAGATATTCAATT
TATTCTCTTGAAAAGTAAAAATAAAGATTGAACTCAAATGCACTGAAGCT
CTGATATTTACATAATTATAAACACGAATGTCAATATGTATGCCAGCAGA
CCAACAGACCTTGATAATCTCCTCTCCCCTGCGCCTGCGGTAGTATCTGT
TTTGATCATGATCCTGAATAGGCAATCCCCTGTGGATGGATTTGTGGTGG
TAACAGCCGAA
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