DT214566

Overview
NameDT214566
Unique NameDT214566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.152e-16
Identity = 40/124 (32.26%), Postives = 70/124 (56.45%), Query Frame = -2 
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PPT         ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 39/124 (31.45%), Postives = 70/124 (56.45%), Query Frame = -2 
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT +        + A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 38/124 (30.65%), Postives = 69/124 (55.65%), Query Frame = -2 
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    ++RG +  K+V + +  ++ K +  FV+W P   K  +C  PP  +          A   + N+T+I E +  +S +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  311 KYMATCLLYRGDVVPKDVHQAVATLKTKRTIQFVDWCPTGFKIGICYQPPQNVPNGDLAKVNRAVCMLSNTTAIAEAWSALSHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA1_CHICK (Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 39/124 (31.45%), Postives = 70/124 (56.45%), Query Frame = -2 
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  272 KYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 395
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA1D_BOVIN (Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 39/124 (31.45%), Postives = 70/124 (56.45%), Query Frame = -2 
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA1C_RAT (Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 39/124 (31.45%), Postives = 70/124 (56.45%), Query Frame = -2 
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLARVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA1C_MOUSE (Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 39/124 (31.45%), Postives = 70/124 (56.45%), Query Frame = -2 
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA1C_CRIGR (Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 39/124 (31.45%), Postives = 70/124 (56.45%), Query Frame = -2 
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA1A_RAT (Tubulin alpha-1A chain OS=Rattus norvegicus GN=Tuba1a PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 39/124 (31.45%), Postives = 70/124 (56.45%), Query Frame = -2 
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBA1A_PIG (Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 39/124 (31.45%), Postives = 70/124 (56.45%), Query Frame = -2 
Query:  273 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 620
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
The following BLAST results are available for this feature:
BLAST of DT214566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
TBA4A_BOVIN7.152e-1632.26Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA_XENTR9.340e-1631.45Tubulin alpha chain OS=Xenopus tropicalis GN=tuba ... [more]
TBA_MYCGR9.340e-1630.65Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA1_CHICK9.340e-1631.45Tubulin alpha-1 chain (Fragment) OS=Gallus gallus ... [more]
TBA1D_BOVIN9.340e-1631.45Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=... [more]
TBA1C_RAT9.340e-1631.45Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tub... [more]
TBA1C_MOUSE9.340e-1631.45Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c P... [more]
TBA1C_CRIGR9.340e-1631.45Tubulin alpha-1C chain OS=Cricetulus griseus GN=TU... [more]
TBA1A_RAT9.340e-1631.45Tubulin alpha-1A chain OS=Rattus norvegicus GN=Tub... [more]
TBA1A_PIG9.340e-1631.45Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_22C01_b2 Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10-2 Citrus sinensis cDNA clone UCRCS10-22C01-E2-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214566 ID=DT214566; Name=DT214566; organism=Citrus sinensis; type=EST; length=861bp
GATTCCAAAGCAAATTGAAGTATCATATTTAAACATACAAGGTTCCAAGA
AAATTAAACAATAAGGGGAAAAGGACGAAAAGATGAAGAAACTATTTCAA
TTAGGCTTCTCCGCTTCTATCTAGATCATGACAAGAAACCAGCAACTGGA
AGTTGAGGTTCCAAAGAATTGCTTCAGAAGCAATCCACCCATCAAAATTA
TTGCTGATAGTCTTCATCAAACTGTTCCTCTTCATCATCATATCCTTCCT
CATCAGCTGTTGCATCTTGGTATTGCTGATACTCTGAAACCAAATCATTC
ATGTTGCTCTCTGCCTCAGTGAACTCCATCTCATCCATACCTTCCCCAGT
ATACCAATGTAAGAAAGCTTTTCTCCTAAACATGGCAGTAAATTGTTCAC
TCACACGCCTGAACATTTCCTGGATAGATGTGGAGTTCCCAATGAACGTG
GAGGCCATCTTCAAACCAGTGGGTGGGATATCACAAACGGTAGACTTCAC
ATTGTTGGGGATCCACTCAACAAAGTATGAGGAGTTCTTGTTCTGAACAT
TCAGCATTTGCTCATCTACTTCCTTGGTGCTCATCTTACCACGGAACATG
GCTGATGCTGTTAGATAGCGGCGTGAGTTTTGAACCTCAGATATTCAATT
TATTCTCTTGAAAAGTAAAAATAAAGATTGAACTCAAATGCACTGAAGCT
CTGATATTTACATAATTATAAACACGAATGTCAATATGTATGCCAGCAGA
CCAACAGACCTTGATAATCTCCTCTCCCCTGCGCCTGCGGTAGTATCTGT
TTTGATCATGATCCTGAATAGGCAATCCCCTGTGGATGGATTTGTGGTGG
TAACAGCCGAA
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