DT214544

Overview
NameDT214544
Unique NameDT214544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DT214544 vs. ExPASy Swiss-Prot
Match: GLRX_PSEAE (Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = -2 
Query:  250 VAVFSKSFCPCCVRVKELLQQLGAKIIAVELDKESDGSQVQSALAEWTGQRTVPNVFIGEKHIGGCDSVTNLHRDGKLVPML 495
            V +++ ++CP C+R K+LLQ+ G     +  D + +   +++ LA   G  TVP ++IGE H+GGCD +  L R GKL  +L
Sbjct:    4 VVIYTTAWCPYCIRAKQLLQRKGVDFQEIACDGKPE---LRAELARKAGSTTVPQIWIGETHVGGCDDLHALERAGKLDALL 82
The following BLAST results are available for this feature:
BLAST of DT214544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GLRX_PSEAE9.239e-1137.80Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_3A06_b2 Ruby Orange Developing Seed cDNA Library UCRCS09-2 Citrus sinensis cDNA clone UCRCS09-3A06-B11-1-4.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214544 ID=DT214544; Name=DT214544; organism=Citrus sinensis; type=EST; length=559bp
AATCGAGTTTCTATTAACGTTACAAATATTACGAGAAATGACATTACTAG
CAAATGCCGTTAATTATAACATAAATGTATCAGAAGTTCAATACCGACTT
CAACATAAACACAACTTTAAAACATTTCAGACAAAGTTCAGATTTATTGC
TCAAACTTATTTTATTCCTGAGAGAAGTAAATCACAAATTGATTGTGCCC
TTTAAGAAGAAGTAGTTCCAGCTGTTGCAGCGATAGCTCCAGCTTCGGTC
AACATAGGAACTAACTTACCGTCTCTGTGCAGGTTTGTTACAGAATCGCA
TCCACCGATGTGTTTTTCACCTATGAACACATTGGGAACGGTGCGTTGTC
CAGTCCATTCTGCCAGAGCAGATTGAACTTGGCTACCATCACTCTCTTTG
TCGAGCTCAACGGCGATGATTTTGGCTCCCAATTGTTGCAAAAGCTCCTT
CACTCTCACACAGCATGGGCAAAACGACTTGCTGAAAACAGCGACGGCGT
TGCCGGAAATGATCTCTTTAGCCTTCTGCGTCGCCATCTTCCTTCGAAAT
TATGAAAAC
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