DT214536

Overview
NameDT214536
Unique NameDT214536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DT214536 vs. ExPASy Swiss-Prot
Match: SCP28_ARATH (Serine carboxypeptidase-like 28 OS=Arabidopsis thaliana GN=SCPL28 PE=2 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 8.574e-14
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = -1 
Query:  135 RSLMASGISVYIYSGDTDGTVPTISIRYSINKLGAKVKTAWYPCY-IQGEXXXXXXXYQN--LTFVTIRGAGHMVPSSQPARALAFFSSFLDGKLPPAAKS 428
            ++L+ + + ++I+SGD+D  +P    R+SIN +  K    WYP Y   G        Y++  LT+ T+R AGH VP SQP  AL  F+ FL     P++ S
Sbjct:  362 KNLLQAHLRIWIFSGDSDAVLPLSGTRHSINAMKLKSSKRWYPWYHSHGLVGGWSQVYEDGLLTYTTVRAAGHEVPLSQPRLALFLFTHFLANHSLPSSPS 462

HSP 2 Score: 30.8018 bits (68), Expect = 8.574e-14
Identity = 11/27 (40.74%), Postives = 18/27 (66.67%), Query Frame = -3 
Query:  421 PWQDCSDAVLRHWKDSPLTVVGGIQEL 501
            PW  CS  + ++WKDSP +++  I+ L
Sbjct:  338 PWTPCSRVIRKNWKDSPKSMLPIIKNL 364
The following BLAST results are available for this feature:
BLAST of DT214536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SCP28_ARATH8.574e-1436.63Serine carboxypeptidase-like 28 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16E08_b2 Ruby Orange Developing Seed cDNA Library UCRCS09-2 Citrus sinensis cDNA clone UCRCS09-16E08-I15-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214536 ID=DT214536; Name=DT214536; organism=Citrus sinensis; type=EST; length=518bp
TTTTACTTTCTTTTTGCTATTAAACATTGTCTGCTTTTGGTGATAATGTC
TAGCCGTTGACTAATGAACTAGGACAAAAGTTTAATAGTTTTGATTCAAA
CTAATTGCAATGATTCAATCTTATCCATTCTCTAGCTTTTTGCTGCGGGT
GGAAGCTTTCCATCTAAGAAGGATGAGAAGAAGGCAAGAGCCCGAGCAGG
TTGAGAACTTGGAACCATGTGTCCAGCACCTCTTATAGTCACAAATGTTA
GGTTCTGGTATCCCACAACATAACCACCAACCTCTCCTTGAATGTAACAA
GGGTACCAAGCTGTCTTTACTTTTGCTCCAAGTTTGTTTATTGAGTACCT
TATCGAAATCGTTGGCACCGTGCCATCAGTGTCTCCACTATAGATGTATA
CACTTATCCCGCTGGCCATTAAGCTCCTGAATGCCCCCCACGACTGTCAA
TGGACTGTCTTTCCAATGACGCAACACAGCGTCGCTGCAATCCTGCCATG
GACCTCGAATCCCCAGTA
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