DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS1_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Jannaschia sp. (strain CCS1) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.683e-31
Identity = 65/135 (48.15%), Postives = 93/135 (68.89%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 592
            EIGKG++  EG  VA+L +G  ++   +A   LS+ GI  T+ADARF KPLD  L+ +L ++H  LITVEEG++GGFGSHV+H +A + + D+G+K+R +VLPD +I+ ASP    A+AG+    I A  L+ LG
Sbjct:  497 EIGKGRMISEGNRVAILNFGTRLKEVQEAAETLSQRGITPTIADARFAKPLDEALILQLARHHEALITVEEGAVGGFGSHVAHLLAENAVFDTGIKYRSMVLPDIFIDQASPKDMYAVAGMNAEDIVAKVLTTLG 631          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_RHOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 64/136 (47.06%), Postives = 89/136 (65.44%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG++  EG  +ALL +G  +  C KA   L+ LG+  T+ADARF KPLD++LV +L ++H  L+T+EEGS+GGFGSHV   +A  G+LD  V+ R +VLPD +++H +PT   A AGL    I       LG+
Sbjct:  496 EIGKGRIVREGNKIALLSFGTRLAECEKAADELATLGLSTTIADARFMKPLDVELVLKLARDHEILLTIEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPTAMYARAGLDAKGIVKKVFEALGK 631          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BRUSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis GN=dxs PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 69/136 (50.74%), Postives = 84/136 (61.76%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG++  EG  VALL +G  +Q CL A   L   G+  TVADARF KPLD  L+R L + H  L+ VEEG++GGFGSHV  F+A DGLLD G+K R + LPD Y +H  P    A AGL    I  T  + L R
Sbjct:  494 EIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BRUSI (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=dxs PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 69/136 (50.74%), Postives = 84/136 (61.76%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG++  EG  VALL +G  +Q CL A   L   G+  TVADARF KPLD  L+R L + H  L+ VEEG++GGFGSHV  F+A DGLLD G+K R + LPD Y +H  P    A AGL    I  T  + L R
Sbjct:  494 EIGKGRIVREGTKVALLSFGTRLQECLAAAEELGATGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BRUC2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=dxs PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 69/136 (50.74%), Postives = 84/136 (61.76%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG++  EG  VALL +G  +Q CL A   L   G+  TVADARF KPLD  L+R L + H  L+ VEEG++GGFGSHV  F+A DGLLD G+K R + LPD Y +H  P    A AGL    I  T  + L R
Sbjct:  494 EIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_HYPNA (1-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomonas neptunium (strain ATCC 15444) GN=dxs PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.712e-30
Identity = 68/136 (50.00%), Postives = 88/136 (64.71%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG+V  EG  +A+L YG  +Q  LKA  +L+  G+  TVADARF KPLD +L+  L + H  L+T+EEGS GGFGS V   +A  G LD+G+K R + LPD + +H +P      AGLT  HIAA A+  LGR
Sbjct:  493 EIGKGRVVREGTSIAILSYGTRLQEALKAAEMLAAQGLSATVADARFAKPLDNELIERLAREHEVLVTIEEGSRGGFGSFVLEHLANCGGLDAGLKVRVMTLPDVFQDHDTPAAMYDQAGLTARHIAARAIEALGR 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.235e-30
Identity = 65/132 (49.24%), Postives = 88/132 (66.67%), Query Frame = -2
Query:  197 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 592
            EIGKG+V  EG +VA+L +GA +   LKA  +L   G+  TVADARFC+PLD  L+  L + H  LIT+E+G++GGFG+ V H++A  G L+ G   R + LPD YI+H SP +  A AGLT + I  TAL+
Sbjct:  496 EIGKGRVMTEGTEVAILSFGAHLAQALKAAEMLEAEGVSTTVADARFCRPLDTDLIDRLIEGHAALITLEQGAMGGFGAMVLHYLARTGQLEKGRAIRTMTLPDCYIDHGSPEEMYAWAGLTANDIRDTALA 627          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_OCHA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dxs PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.235e-30
Identity = 68/136 (50.00%), Postives = 83/136 (61.03%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG++  EG  VALL +G  +Q CL A   L   G+  TVADARF KPLD  L+R L + H  L+ VEEG++GGF SHV  F+A DGLLD G+K R + LPD Y +H  P    A AGL    I     + LGR
Sbjct:  494 EIGKGRIVREGTKVALLSFGTRLQECLAAADELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFASHVLQFLATDGLLDRGLKVRALTLPDTYQDHGKPDAMYAEAGLDRTGIVHAVFAALGR 629          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BRUME (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis GN=dxs PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.235e-30
Identity = 69/136 (50.74%), Postives = 83/136 (61.03%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG++  EG  VALL +G  +Q CL A   L   G+  TVADARF KPLD  L+R L + H  L+ VEEG++GGFGSHV  F+A DGLLD G K R + LPD Y +H  P    A AGL    I  T  + L R
Sbjct:  494 EIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGFKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BRUMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=dxs PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.235e-30
Identity = 69/136 (50.74%), Postives = 83/136 (61.03%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG++  EG  VALL +G  +Q CL A   L   G+  TVADARF KPLD  L+R L + H  L+ VEEG++GGFGSHV  F+A DGLLD G K R + LPD Y +H  P    A AGL    I  T  + L R
Sbjct:  494 EIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGFKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS1_JANSC7.683e-3148.151-deoxy-D-xylulose-5-phosphate synthase 1 OS=Janna... [more]
DXS_RHOPB1.311e-3047.061-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BRUSU1.311e-3050.741-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUSI1.311e-3050.741-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUC21.311e-3050.741-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_HYPNA1.712e-3050.001-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomo... [more]
DXS_RHOCA2.235e-3049.241-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoba... [more]
DXS_OCHA42.235e-3050.001-deoxy-D-xylulose-5-phosphate synthase OS=Ochroba... [more]
DXS_BRUME2.235e-3050.741-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUMB2.235e-3050.741-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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