DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17
Identity = 55/135 (40.74%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  212 IGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            +GKG+V       +GK VA+L +G MV     A +L +   +D TVA+ RF KP+D +LVREL Q H +L+TVEEG  +GG GS       ++ +++ G   RP++   LPD +++H  P + LA+ GL G  IA
Sbjct:  489 LGKGEVRRRTSQPDGKRVAILAFGTMV-----APSLAAADALDATVANMRFVKPIDAELVRELAQTHDYLVTVEEGCVMGGAGS-----ACVEAMMEGGAV-RPVLQLGLPDRFVDHGDPAKLLAMCGLDGDGIA 612          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_ACAM1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17
Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = -2
Query:  191 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAATALSLL 589
            IGK +    G DV LL YG MV    +   +L++ G+  TV +ARF KPLD +L+  L Q    ++T+EEG L GGFGS V     L+ L+D  V   P+    +PD  +EHA+P Q  A  GLT   +A   L LL
Sbjct:  495 IGKAETLRHGDDVLLLAYGTMVNLASQVADMLTEHGVRATVVNARFAKPLDTELIIPLAQKIGQVVTLEEGCLPGGFGSAV-----LEALMDHQV-MAPVTRIGVPDQLVEHATPDQSKAELGLTPAQVAERVLGLL 625          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SYMTH (1-deoxy-D-xylulose-5-phosphate synthase OS=Symbiobacterium thermophilum GN=dxs PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.247e-17
Identity = 54/141 (38.30%), Postives = 77/141 (54.61%), Query Frame = -2
Query:  170 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREAL 589
            IG+G+V  EG DVAL+G G M + C +A  LL++  I   V + RF KPLD +L+    +    ++TVEE  L GGFGS V    A  G+     +   + +PD +++H  P + L   GLT   +A  A +LL R R  L
Sbjct:  486 IGRGEVMQEGADVALIGLGTMARVCQEAARLLAEKSISAMVINPRFVKPLDAELLLRAGREVGAVVTVEEACLAGGFGSAVLELYAAHGV---NARVERMGIPDEFVDHGQPARYLERYGLTPEGVAQRAEALLLRMRSDL 623          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_NOSP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.247e-17
Identity = 52/134 (38.81%), Postives = 78/134 (58.21%), Query Frame = -2
Query:  200 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSG--VKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATAL 592
            EIGK ++   G DV ++ YG MV   ++A  +LS+ GI+ TV +ARF KPLD +L+  L +    +IT+EEG  +GGFGS ++     + L+D+   V  +   +PD  ++HA P +     GLT H IA   L
Sbjct:  495 EIGKSEILRTGDDVLIVAYGTMVYPGMQAAEILSEHGIEATVINARFVKPLDTELILPLAKKIGRVITLEEGCIMGGFGSAIA-----EALMDADILVPVKRFGVPDVLVDHAEPNESKTELGLTSHQIAERVL 623          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_DESAP (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulforudis audaxviator (strain MP104C) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.247e-17
Identity = 54/132 (40.91%), Postives = 75/132 (56.82%), Query Frame = -2
Query:  197 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 589
            IG+ +V  EG D+ L+  G MV   +KA  +L++ GI+ +V +ARF KPLD K +    +    LIT+EE  + GGFGS V   +   GL D  V+ + I LPD +IEH +P    A  GLT   +  TA S
Sbjct:  489 IGRAEVLREGDDITLIAIGNMVPTAVKAAEILAERGIEASVVNARFVKPLDEKCICHYARRTGRLITLEENVIAGGFGSAVQELLVAKGLTD--VRVQLIGLPDVFIEHGAPHLLRAKYGLTVDRVVRTAES 618          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CHRVO (1-deoxy-D-xylulose-5-phosphate synthase OS=Chromobacterium violaceum GN=dxs PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.247e-17
Identity = 54/121 (44.63%), Postives = 68/121 (56.20%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG-SLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 589
            IGKG V   GK VA+L +G+MV   L A   L     D TVAD RF KPLD +L+R+L Q H  ++TVEE   +GG GS     +   GL    V    + LPD+Y+EH  P   L+L GL
Sbjct:  489 IGKGVVRRRGKQVAILAFGSMVHPALAAAEAL-----DATVADMRFVKPLDAELIRKLAQTHELIVTVEENVVMGGAGSGCGEALQAMGL---AVPTLHLGLPDDYVEHGDPALLLSLCGL 601          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BREBN (1-deoxy-D-xylulose-5-phosphate synthase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.077e-16
Identity = 54/134 (40.30%), Postives = 77/134 (57.46%), Query Frame = -2
Query:  191 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 589
            IGK ++  EGK VA+L +G + +    A   L + GI   + +ARFCKPLD +L+  L +    +ITVEEGS +GGFGS V    +  G    G+  + + +PD ++EH S  +Q    GLT  HIAA   SL+
Sbjct:  488 IGKAEIVREGKHVAILSFGHVFEIAEAAVNQLQEEGIKPMLVNARFCKPLDEELLFRLAKEGYDIITVEEGSEMGGFGSAVIECYSRAGY--HGMNVQIVAVPDYFVEHGSVKEQRQEVGLTADHIAARVRSLM 619          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEE4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas entomophila (strain L48) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16
Identity = 55/140 (39.29%), Postives = 77/140 (55.00%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG V  +G  VALL +G  +   L+         ID TV D RF KPLD  LV E+   H  L+T+EE + +GG G+ V  F+A +G++      +P++   LPD Y+EHA P Q LA  GL    I A+  + + +
Sbjct:  500 EIGKGVVRRQGGKVALLVFGVQLTEALQVAEQ-----IDATVVDMRFVKPLDEALVLEMAAGHELLVTIEENAIMGGAGAAVGEFLAREGVV------KPLLHLGLPDIYVEHAKPAQMLAECGLDAAGIEASVKARMAK 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEPK (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain KT2440) GN=dxs PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 57/140 (40.71%), Postives = 78/140 (55.71%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG V  +G+ VALL +G  +     A A+     I+ TV D RF KPLD  LV EL  +H  L+T+EE + +GG G+ V  F+A   +L      +P++   LPD Y+EHA P Q LA  GL    I A+  + + R
Sbjct:  500 EIGKGVVRRQGEKVALLVFGVQL-----AEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVL------KPLLHLGLPDIYVEHAKPAQMLAECGLDAAGIEASVKARMAR 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia sp. (strain 383) GN=dxs PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  212 IGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            +GKG+V       EGK VA+L +G MV     A +L +   +D TVA+ RF KP+D  LVREL + H +L+TVEEG  +GG GS       ++ L++SGV  RP++   LPD +I+H  P + L+  GL G  IA
Sbjct:  489 LGKGEVRRQTSQPEGKRVAILAFGTMV-----APSLAAAEELDATVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGS-----ACVEALMESGV-IRPVLQLGLPDLFIDHGDPAKLLSQCGLDGAGIA 612          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_BURTA6.314e-1740.741-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_ACAM16.314e-1741.611-deoxy-D-xylulose-5-phosphate synthase OS=Acaryoc... [more]
DXS_SYMTH8.247e-1738.301-deoxy-D-xylulose-5-phosphate synthase OS=Symbiob... [more]
DXS_NOSP78.247e-1738.811-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc ... [more]
DXS_DESAP8.247e-1740.911-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_CHRVO8.247e-1744.631-deoxy-D-xylulose-5-phosphate synthase OS=Chromob... [more]
DXS_BREBN1.077e-1640.301-deoxy-D-xylulose-5-phosphate synthase OS=Breviba... [more]
DXS_PSEE41.407e-1639.291-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEPK2.399e-1640.711-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_BURS32.399e-1642.961-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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